distmat.input

emboss的linux版本的源代码

<a name="input.1"></a>
<h3>Input files for usage example </h3>
<p><h3>File: pax.align</h3>
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<pre>
PileUp



   MSF:  603  Type: P    Check:  9004   .. 

 Name: PAX4_HUMAN oo  Len:  603  Check:  6594  Weight:  11.2
 Name: PAX6_HUMAN oo  Len:  603  Check:  7176  Weight:  9.1
 Name: PAX3_HUMAN oo  Len:  603  Check:  7760  Weight:  9.5
 Name: PAX7_HUMAN oo  Len:  603  Check:  4677  Weight:  13.7
 Name: PAX1_HUMAN oo  Len:  603  Check:  9671  Weight:  8.7
 Name: PAX9_HUMAN oo  Len:  603  Check:   565  Weight:  12.0
 Name: PAX2_HUMAN oo  Len:  603  Check:  9553  Weight:  8.7
 Name: PAX5_HUMAN oo  Len:  603  Check:   448  Weight:  11.2
 Name: PX8A_HUMAN oo  Len:  603  Check:  6763  Weight:  7.5
 Name: PX8D_HUMAN oo  Len:  603  Check:  5797  Weight:  7.9

//



PAX4_HUMAN      .......... .......... .........M HQDGISSMNQ LGGLFVNGRP 
PAX6_HUMAN      .......... .......... .......... MQNSHSGVNQ LGGVFVNGRP 
PAX3_HUMAN      MTTLAGAVPR MMRPGPGQNY PRSGFPLEVS TPLGQGRVNQ LGGVFINGRP 
PAX7_HUMAN      MAALPGTVPR MMRPAPGQNY PRTGFPLEVS TPLGQGRVNQ LGGVFINGRP 
PAX1_HUMAN      .......... .......... .......... MEQTYGEVNQ LGGVFVNGRP 
PAX9_HUMAN      .......... .......... .......... MEPAFGEVNQ LGGVFVNGRP 
PAX2_HUMAN      .......... ........MD MHCKADPFSA MHPGHGGVNQ LGGVFVNGRP 
PAX5_HUMAN      .......... ........MD LEKNYPTPRT SRTGHGGVNQ LGGVFVNGRP 
PX8A_HUMAN      .......... .......... .....MPHNS IRSGHGGLNQ LGGAFVNGRP 
PX8D_HUMAN      .......... .......... .....MPHNS IRSGHGGLNQ LGGAFVNGRP 


PAX4_HUMAN      LPLDTRQQIV RLAVSGMRPC DISRILKVSN GCVSKILGRY YRTGVLEPKG 
PAX6_HUMAN      LPDSTRQKIV ELAHSGARPC DISRILQVSN GCVSKILGRY YETGSIRPRA 
PAX3_HUMAN      LPNHIRHKIV EMAHHGIRPC VISRQLRVSH GCVSKILCRY QETGSIRPGA 
PAX7_HUMAN      LPNHIRHKIV EMAHHGIRPC VISRQLRVSH GCVSKILCRY QETGSIRPGA 
PAX1_HUMAN      LPNAIRLRIV ELAQLGIRPC DISRQLRVSH GCVSKILARY NETGSILPGA 
PAX9_HUMAN      LPNAIRLRIV ELAQLGIRPC DISRQLRVSH GCVSKILARY NETGSILPGA 
PAX2_HUMAN      LPDVVRQRIV ELAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIKPGV 
PAX5_HUMAN      LPDVVRQRIV ELAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIKPGV 
PX8A_HUMAN      LPEVVRQRIV DLAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIRPGV 
PX8D_HUMAN      LPEVVRQRIV DLAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIRPGV 


PAX4_HUMAN      IGGSKPR.LA TPPVVARIAQ LKGECPALFA WEIQRQLCAE GLCTQDKTPS 
PAX6_HUMAN      IGGSKPR.VA TPEVVSKIAQ YKRECPSIFA WEIRDRLLSE GVCTNDNIPS 
PAX3_HUMAN      IGGSKPKQVT TPDVEKKIEE YKRENPGMFS WEIRDKLLKD AVCDRNTVPS 
PAX7_HUMAN      IGGSKPRQVA TPDVEKKIEE YKRENPGMFS WEIRDRLLKD GHCDRSTVPS 
PAX1_HUMAN      IGGSKPR.VT TPNVVKHIRD YKQGDPGIFA WEIRDRLLAD GVCDKYNVPS 


<font color=red>  [Part of this file has been deleted for brevity]</font>

PX8A_HUMAN      VSSSSSTPSS LSSSAFLDLQ QVGSGVPPFN AFPHAASVYG QFTGQALLSG 
PX8D_HUMAN      ....KSAPGS RPS....... .....MP... .FPMLPPCTG SSRARPSSQG 


PAX4_HUMAN      .......... .......... .....ERCLS DTPPKACLKP CWDCGSFLLP 
PAX6_HUMAN      .......... .......... .SFTMANNLP MQPPVPSQTS SYSCMLPTSP 
PAX3_HUMAN      NGL.SPQVM. .......... GLLTNHGGVP HQPQTDYALS PLTGGLEPTT 
PAX7_HUMAN      NGL.SPQVM. .......... SILGNPSAVP PQPQADFSIS PLHGGLDSAT 
PAX1_HUMAN      .......... .......... GAGVAVHGGE LAAAMTFKHR EGTDRKPP.. 
PAX9_HUMAN      .......... .......... ......HNCD IPASLAFKGM QAARE..... 
PAX2_HUMAN      .......... .......... GSYPTSTLAG MVPGSEFSGN PYSHPQYTAY 
PAX5_HUMAN      .......... .......... GSYSAPTLTG MVPGSEFSGS PYSHPQYSSY 
PX8A_HUMAN      REMVGPTLPG YPPHIPTSGQ GSYASSAIAG MVAGSEYSGN AYGHTPYSSY 
PX8D_HUMAN      ERWWGPRCP. .......... DTHPTSPPAD RAAMPPLPSQ AWWQEVN... 


PAX4_HUMAN      VIAPSCVDVA WP.CLDASLA HHLIGGAGKA TPTHFS.... .......... 
PAX6_HUMAN      SVNGRSYDTY TPPHMQTHMN SQPMGTSGTT STGLISPGVS VPVQVPGSEP 
PAX3_HUMAN      TVSASCSQRL DHMKSLDSLP TSQSYCPPTY STTGYSMDPV TGYQYGQYGQ 
PAX7_HUMAN      SISASCSQRA DSIKPGDSLP TSQAYCPPTY STTGYSVDPV AGYQYGQYGQ 
PAX1_HUMAN      ..SSGSKAPD ALSSLH.... ....GLPIPA STS....... .......... 
PAX9_HUMAN      ..GSHSVTAS AL........ .......... .......... .......... 
PAX2_HUMAN      NEAWRFSNPA LLSSPYYYSA APR.SAPAAR AAAYDRH... .......... 
PAX5_HUMAN      NDSWRFPNPG LLGSPYYYSA AARGAAPPAA ATAYDRH... .......... 
PX8A_HUMAN      SEAWGFPNSS LLSSPYYYSS TSRPSAPPTT ATAFDHL... .......... 
PX8D_HUMAN      ..TLAMPMAT PPTPP..... TARPGASPTP AC........ .......... 


PAX4_HUMAN      .....HWP.. .......... .......... .......... .......... 
PAX6_HUMAN      DMS.QYWPRL Q......... .......... .......... .......... 
PAX3_HUMAN      S...KPWTF. .......... .......... .......... .......... 
PAX7_HUMAN      SECLVPWASP VPIPSPTPRA SCLFMESYKV VSGWGMSISQ MEKLKSSQME 
PAX1_HUMAN      .......... .......... .......... .......... .......... 
PAX9_HUMAN      .......... .......... .......... .......... .......... 
PAX2_HUMAN      .......... .......... .......... .......... .......... 
PAX5_HUMAN      .......... .......... .......... .......... .......... 
PX8A_HUMAN      .......... .......... .......... .......... .......... 
PX8D_HUMAN      .......... .......... .......... .......... .......... 


PAX4_HUMAN      ...
PAX6_HUMAN      ...
PAX3_HUMAN      ...
PAX7_HUMAN      QFT
PAX1_HUMAN      ...
PAX9_HUMAN      ...
PAX2_HUMAN      ...
PAX5_HUMAN      ...
PX8A_HUMAN      ...
PX8D_HUMAN      ...

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