tfscan.input

emboss的linux版本的源代码

<a name="input.1"></a>
<h3>Input files for usage example </h3>

'tembl:hsfos' is a sequence entry in the example nucleic acid database 'tembl'
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<p><h3>Database entry: tembl:hsfos</h3>
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ID   HSFOS      standard; DNA; HUM; 6210 BP.
XX
AC   K00650; M16287;
XX
SV   K00650.1
XX
DT   26-JUL-1991 (Rel. 28, Created)
DT   02-JUL-1999 (Rel. 60, Last updated, Version 3)
XX
DE   Human fos proto-oncogene (c-fos), complete cds.
XX
KW   c-myc proto-oncogene; fos oncogene; proto-oncogene.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-4165
RX   MEDLINE; 83221560.
RA   van Straaten F., Muller R., Curran T., Van Beveren C., Verma I.M.;
RT   "Complete nucleotide sequence of a human c-onc gene: deduced amino acid
RT   sequence of the human c-fos protein";
RL   Proc. Natl. Acad. Sci. U.S.A. 80(11):3183-3187(1983).
XX
RN   [2]
RX   MEDLINE; 86028185.
RA   Treisman R.;
RT   "Transient accumulation of c-fos RNA following serum stimulation requires a
RT   conserved 5' element and c-fos 3' sequences";
RL   Cell 42(3):889-902(1985).
XX
RN   [3]
RP   4166-6210
RX   MEDLINE; 87217118.
RA   Verma I.M., Deschamps J., Van Beveren C., Sassone-Corsi P.;
RT   "Human fos gene";
RL   Cold Spring Harb. Symp. Quant. Biol. 51:0-0(0).
XX
DR   EPD; EP11145; HS_FOS.
DR   GDB; 119917; FOS.
DR   SWISS-PROT; P01100; FOS_HUMAN.
DR   TRANSFAC; R00458; HS$CFOS_01.
DR   TRANSFAC; R00459; HS$CFOS_02.
DR   TRANSFAC; R00460; HS$CFOS_03.
DR   TRANSFAC; R00461; HS$CFOS_04.
DR   TRANSFAC; R00463; HS$CFOS_06.
DR   TRANSFAC; R00464; HS$CFOS_07.
DR   TRANSFAC; R00465; HS$CFOS_08.
DR   TRANSFAC; R00466; HS$CFOS_09.


<font color=red>  [Part of this file has been deleted for brevity]</font>

     ccagctgtgc agctgcccac cgcaagggca gcagcagcaa tgagccttcc tctgactcgc      3300
     tcagctcacc cacgctgctg gccctgtgag ggggcaggga aggggaggca gccggcaccc      3360
     acaagtgcca ctgcccgagc tggtgcatta cagagaggag aaacacatct tccctagagg      3420
     gttcctgtag acctagggag gaccttatct gtgcgtgaaa cacaccaggc tgtgggcctc      3480
     aaggacttga aagcatccat gtgtggactc aagtccttac ctcttccgga gatgtagcaa      3540
     aacgcatgga gtgtgtattg ttcccagtga cacttcagag agctggtagt tagtagcatg      3600
     ttgagccagg cctgggtctg tgtctctttt ctctttctcc ttagtcttct catagcatta      3660
     actaatctat tgggttcatt attggaatta acctggtgct ggatattttc aaattgtatc      3720
     tagtgcagct gattttaaca ataactactg tgttcctggc aatagtgtgt tctgattaga      3780
     aatgaccaat attatactaa gaaaagatac gactttattt tctggtagat agaaataaat      3840
     agctatatcc atgtactgta gtttttcttc aacatcaatg ttcattgtaa tgttactgat      3900
     catgcattgt tgaggtggtc tgaatgttct gacattaaca gttttccatg aaaacgtttt      3960
     attgtgtttt taatttattt attaagatgg attctcagat atttatattt ttattttatt      4020
     tttttctacc ttgaggtctt ttgacatgtg gaaagtgaat ttgaatgaaa aatttaagca      4080
     ttgtttgctt attgttccaa gacattgtca ataaaagcat ttaagttgaa tgcgaccaac      4140
     cttgtgctct tttcattctg gaagtcttgt aagtttctga aaggtattat tggagaccag      4200
     tttgtcaaga agggtagctg ctggaggggg acacaccctc tgtctgatcc cttatcaaag      4260
     aggacaagga aactatagag ctgattttag aatattttac aaatacatgc cttccattgg      4320
     aatgctaaga ttttctactg cttctgggga cgggaaaccg ctgtgtaaca gcttttgtgg      4380
     gaatacattt tttctgtttc agtactcgca gggggaaata tttaaatttt gttgtgctaa      4440
     tattaaattc agatgttttg atcttaaagg aaccctttaa gcaaacagaa cctagctttg      4500
     tacagactat tttaactttt tattctcaca aaatcacgtg gagggttatt ctacttcaaa      4560
     gatgagcaaa ttgaagaatg gttagaataa acaactttct tgatattccg ttatcggcat      4620
     tagaatcttc ctgctcgtta tcgtatccag caggctgaac tgcctcttga tacttggtta      4680
     aaaaaaattt tcaggccggg cgcggtggcc catgcctgta atcctagcac tttgggaggc      4740
     cgaggcaggc ggatcacctg aggtcgggag ttcgagacca gcctgaccaa catggagaaa      4800
     ccccgtcttt actaaaaata caaaattagc ctggtgtggt ggtgcatgcc tgtaatccta      4860
     gctacttgag aggctgagac aggaaaatca cttgaactcg ggaggcggat gttgcagcga      4920
     actgagattg cgccattgca ctccagcctg ggcaacaaga ttgaaactct gtttaaaaaa      4980
     aaaagttttc actaatgtgt acattttttt gtactctttt attctcgaaa gggaaggagg      5040
     gctattgccc tatcccttat taataaatgc attgtggttt ctggtttctc taataccata      5100
     tgcccttcat tcagtttata gtgggcggaa gtgggggaga aaaagttgct cagaaatcaa      5160
     aagatatctc aaacagcaca aataatggct gatcgttctg caaacaaaaa gttacataat      5220
     agctcaagaa ggagaagtca acatgactct gaacaagctt taacttagaa actttatcat      5280
     cttaaggaag aacgtgacct ttgtccagga cgtctctggt aatggggcac ttacacacac      5340
     atgcacacgt acaaaccaca gggaaaggag accgcccttc tgcctctgct cgcgagtatc      5400
     acgcaggcac catgcactat gttttcacac acactgggtg gaagaagagc ttcagcgcca      5460
     gtcttctaat gctttggtga taatgaaaat cactgggtgc ttatggggtg tcatattcaa      5520
     tcgagttaaa agttttaatt caaaatgaca gttttactga ggttgatgtt ctcgtctatg      5580
     atatctctgc ccctcccata aaaatggaca tttaaaagca acttaccgct ctttagatca      5640
     ctcctatatc acacaccact tggggtgctg tttctgctag acttgtgatg acagtggcct      5700
     taggatccct gtttgctgtt caaagggcaa atattttata gcctttaaat atacctaaac      5760
     taaatacaga attaatataa ctaacaaaca cctggtctga aataacaagg tgatctaccc      5820
     tggaaggaac ccagctggtg ggccaggagc ggtggctcac acctgtaatt ccagcacttt      5880
     gggaggctga gacaggagga tcactggagt ccaggagttt gagaccagcc tgggcaacat      5940
     ggcaaaaccc agtgtgcttc tgttgtccca gctacactac tcaggaggct gaggcaggag      6000
     tatgacttga gcctgggagg gggaggttgc agagaactga tattgcacca ccactgcact      6060
     ccagcctggg tgacacagca aaaccctatc tcaaaaaaaa aaaaaaaaaa aaggaaccca      6120
     gctggttcct gtaggtgtgc aataataaca accagaggaa gaaaaggaag acgatttccc      6180
     agatgaagaa gggcagctgg accttcggac                                       6210
//
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