wordmatch.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: hba_human.wordmatch</h3>
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<pre>
########################################
# Program: wordmatch
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: wordmatch
#    [-asequence] tsw:hba_human
#    [-bsequence] tsw:hbb_human
# Align_format: match
# Report_file: hba_human.wordmatch
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
#=======================================

     5 HBA_HUMAN       +       58..62       HBB_HUMAN       +       63..67
     4 HBA_HUMAN       +       14..17       HBB_HUMAN       +       15..18
     4 HBA_HUMAN       +      116..119      HBB_HUMAN       +      121..124

#---------------------------------------
#---------------------------------------
</pre>
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<p><h3>File: HBA_HUMAN.gff</h3>
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<pre>
##gff-version 2.0
##date 2006-07-15
##Type Protein HBA_HUMAN
HBA_HUMAN	wordmatch	misc_feature	58	62	1.000	+	.	Sequence "HBA_HUMAN.1" ; note "HBB_HUMAN"
HBA_HUMAN	wordmatch	misc_feature	14	17	1.000	+	.	Sequence "HBA_HUMAN.2" ; note "HBB_HUMAN"
HBA_HUMAN	wordmatch	misc_feature	116	119	1.000	+	.	Sequence "HBA_HUMAN.3" ; note "HBB_HUMAN"
</pre>
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<p><h3>File: HBB_HUMAN.gff</h3>
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<pre>
##gff-version 2.0
##date 2006-07-15
##Type Protein HBB_HUMAN
HBB_HUMAN	wordmatch	misc_feature	63	67	1.000	+	.	Sequence "HBB_HUMAN.1" ; note "HBA_HUMAN"
HBB_HUMAN	wordmatch	misc_feature	15	18	1.000	+	.	Sequence "HBB_HUMAN.2" ; note "HBA_HUMAN"
HBB_HUMAN	wordmatch	misc_feature	121	124	1.000	+	.	Sequence "HBB_HUMAN.3" ; note "HBA_HUMAN"
</pre>
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