embossdata.usage

来自「emboss的linux版本的源代码」· USAGE 代码 · 共 539 行

USAGE
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<b>Here is a sample session with embossdata</b><p>Display the directories searched for EMBOSS data files: <p><p><table width="90%"><tr><td bgcolor="#CCFFFF"><pre>% <b>embossdata </b>Finds or fetches data files read by EMBOSS programsData file name: <b></b># The following directories can contain EMBOSS data files.# They are searched in the following order until the file is found.# If the directory does not exist, then this is noted below.# '.' is the UNIX name for your current working directory..                                                            Exists.embossdata                                                  Does not exist/homes/pmr                                                   Exists/homes/pmr/.embossdata                                       Does not exist/homes/pmr/local/share/EMBOSS/data/                          Exists</pre></td></tr></table><p><p><p><p><b>Example 2</b><p>Display the names of data files in all of the possible data directories: This is run on a small test system and so the results will probably be different when you run this. <p><p><table width="90%"><tr><td bgcolor="#CCFFFF"><pre>% <b>embossdata -showall </b>Finds or fetches data files read by EMBOSS programsData file name: <b></b>DIRECTORY: /homes/pmr/local/share/EMBOSS/data/  EGC.10  EGC.11  EGC.12  EGC.13  EGC.14  EGC.15  EGC.16  EGC.21  EGC.22  EGC.23  EPAM10  EPAM20  EPAM30  EPAM40  EPAM50  EPAM60  EPAM70  EPAM80  EPAM90  edialignmat  Eenergy.dat  EDNAMAT  Etags.swiss  Matrices.proteinstructure  Emass.dat  Etags.gffprotein  EGC.txt  Ehth87.dat  Eaa_hydropathy.dat  Enakai.dat  EGC.0  EGC.1  EGC.2  EGC.3  EGC.4  EGC.5  EGC.6  EGC.9  Eangles_tri.dat  Epprofile  Efreqs.dat  Emwfilter.dat  ENUC.4.2  ENUC.4.4  Etags.embl  Etags.gff3  tp400_trans  Etags.gff  Etags.pir  EPAM100  EPAM110  EPAM120  EPAM130  EPAM140  EPAM150  EPAM160  EPAM170  EPAM180  EPAM190  EPAM200  EPAM210  EPAM220  EPAM230  EPAM240  EPAM250  EPAM260  EPAM270  EPAM280  EPAM290  EPAM300  EPAM310  EPAM320  EPAM330  EPAM340  EPAM350  EPAM360  EPAM370  EPAM380  EPAM390  EPAM400  EPAM410  EPAM420  EPAM430  EPAM440  EPAM450  EPAM460  EPAM470  EPAM480  EPAM490  EPAM500  Ehet.dat  Evdw.dat  Edna.melt  Eaa_properties.dat  Eamino.dat~  EBLOSUMN  Eangles.dat  tfinsect  tffungi  Etcode.dat  tfother  tfplant  Ehth.dat  Etags.emboss  tp400_dna  Ebases.iub  Efeatures.gff  Efeatures.pir  Etags.protein  Eaa_acc_surface.dat  Epepcoil.dat  Ememe.dat  Efeatures.gffprotein  Eprior1.plib  Efeatures.embl  Efeatures.gff3  EBLOSUM30  EBLOSUM35  EBLOSUM40  EBLOSUM45  EBLOSUM50  EBLOSUM55  EBLOSUM60  EBLOSUM62  EBLOSUM65  EBLOSUM70  EBLOSUM75  EBLOSUM80  EBLOSUM85  EBLOSUM90  EDNAFULL  Emassmod.dat  Efeatures.emboss  Matrices.nucleotide  Epk.dat  tfvertebrate  Efeatures.protein  Erna.melt  Eamino.dat  EBLOSUM62-12  Eantigenic.dat  Efeatures.swiss  Eembl.ior  tp400_prot  Eprior30.plib  Esig.euk  Esig.pro  EGC.index  Ewhite-wimley.dat  Matrices.protein  embossre.equ  Edayhoff.freqDIRECTORY: /homes/pmr/local/share/EMBOSS/data/REBASE  dummyfile  embossre.enz  embossre.equ  embossre.ref  embossre.supDIRECTORY: /homes/pmr/local/share/EMBOSS/data/AAINDEX  dummyfile  kytj820101  chop780101  chop780201  chop780202  chop780203  chop780204  chop780205  chop780206  chop780207  chop780208  chop780209  chop780210  chop780211  chop780212  chop780213  chop780214  chop780215  chop780216DIRECTORY: /homes/pmr/local/share/EMBOSS/data/CODONS  EAedes_aegypti.cut  Ecyapa.cut  Eerwct.cut  Ehuman.cut  Eratsp.cut  Esta.cut  Ecaeel.cut  EAedes_atropalpus.cut  Estaau.cut  Edrome_high.cut  Echmp.cut  Eyerpe.cut  Ecrisp.cut  Efish.cut  Esty.cut  Ehalsa.cut  Emyctu.cut  Esus.cut  Echnt.cut  Edicdi.cut  Echos.cut  EAmblyomma_americanum.cut  Encr.cut  Epolyomaa2.cut  EAphrodite_aculeata.cut  Ebommo.cut  Eysc_h.cut  Eschpo_high.cut  Etob.cut  Eneu.cut  Etom.cut  Ephix174.cut  Emedsa.cut  Eanidmit.cut  Emsa.cut  Engo.cut  Emse.cut  Epethy.cut  Esynsp.cut  Emta.cut  Etrb.cut  Eani_h.cut  Etheth.cut  Echicken.cut  Emtu.cut  Emva.cut  Ebpphx.cut  Eschpo_cai.cut  Emus.cut  Eacc.cut  Eorysa.cut  Eham.cut  Ebraja.cut  Eshpsp.cut  Emanse.cut  Emaize_chl.cut  Edro_h.cut  Echzm.cut  Echzmrubp.cut  Emze.cut  Evibch.cut  Epombecai.cut  EAstacus_astacus.cut  Ebrana.cut  Erhoca.cut  Eemeni_high.cut  Evco.cut  Ehha.cut  Eanasp.cut  Ebacme.cut  Esyhsp.cut  Erabit.cut  Eneigo.cut  Ecanal.cut  Ehin.cut  Elyces.cut  Eklepn.cut  Ebrare.cut  Eyscmt.cut  Epseae.cut  Eemeni_mit.cut  Ehma.cut  Eani.cut  Ecanfa.cut  Emixlg.cut  Ecaucr.cut  Epae.cut  Ephavu.cut  Ebovin.cut  Ehorvu.cut  Ebacst.cut  Ebacsu.cut  Echlre.cut  Epea.cut  Edrome.cut  Esheep.cut  Erabsp.cut  Epfa.cut  Esalsa.cut  Easn.cut  Ebacsu_high.cut  Eecoli_high.cut  Eath.cut  Epet.cut  Ebja.cut  Emacfa.cut  EAcanthocheilonema_viteae.cut  Esalsp.cut  Eyeast_cai.cut  Eatu.cut  Echltr.cut  Eoncmy.cut  Eavi.cut  Ecac.cut  Eemeni.cut  Esalty.cut  Ehum.cut  Eprovu.cut  Epig.cut  Esoybn.cut  Ecal.cut  Ephv.cut  Ephy.cut  Ebme.cut  Erhosh.cut  Ebna.cut  Ewht.cut  Ebly.cut  Ebmo.cut  Ef1.cut  Emetth.cut  EAnadara_trapezia.cut  Ebovsp.cut  Eccr.cut  Erhile.cut  Eplafa.cut  Erhime.cut  Ebov.cut  Ecel.cut  Eoncsp.cut  Epsepu.cut  Estrco.cut  Echi.cut  Epot.cut  Echk.cut  Epsesm.cut  Etetsp.cut  Eklula.cut  Etetth.cut  Ebsu_h.cut  Ebst.cut  Ebsu.cut  Emaize.cut  Eppu.cut  Exel.cut  Emouse.cut  Eagrtu.cut  Epse.cut  Eserma.cut  Eazovi.cut  Epsy.cut  Ewheat.cut  Eyeast.cut  Eacica.cut  Erab.cut  Eddi.cut  EAedes_albopictus.cut  Espo_h.cut  Epvu.cut  Etobac.cut  Erat.cut  Erca.cut  Eaidlav.cut  Ezebrafish.cut  Ecpx.cut  Ecre.cut  Cut.index  Estrmu.cut  Efmdvpolyp.cut  Etobcp.cut  Eyeastcai.cut  Estrpn.cut  Eyen.cut  Ectr.cut  Estrpu.cut  Emzecp.cut  Exenopus.cut  Edrosophila.cut  Eeco_h.cut  Eorysa_chl.cut  Erhm.cut  Eric.cut  Ekla.cut  Earath.cut  Eeca.cut  Echick.cut  EAedes.cut  Eeco.cut  Erle.cut  Edog.cut  Emam_h.cut  Eyeast_high.cut  Erme.cut  Esau.cut  Esoltu.cut  Emammal_high.cut  Esco.cut  Ekpn.cut  Edro.cut  Eadenovirus5.cut  Exenla.cut  Eadenovirus7.cut  Etobac_chl.cut  Elacdl.cut  Esgi.cut  EDictyostelium_discoideum.cut  Erabbit.cut  Eddi_h.cut  Eshp.cut  Ersp.cut  Eysc.cut  Ella.cut  Ecrigr.cut  Emac.cut  Emarpo_chl.cut  Eecoli.cut  Edicdi_high.cut  Eysp.cut  Esv40.cut  Eyeren.cut  Edayhoff.cut  Etrybr.cut  Ehaein.cut  Etrycr.cut  Esli.cut  Esynco.cut  Esma.cut  Eslm.cut  Eschma.cut  Esmi.cut  Esyncy.cut  Ezma.cut  Etbr.cut  Esmu.cut  Etcr.cut  Ehalma.cut  Eneucr.cut  Echisp.cut  Espi.cut  Emussp.cut  Ecloab.cut  Epombe.cut  Espiol.cut  Esoy.cut  Espn.cut  Espo.cut  Eter.cut  Eyeast_mit.cut  Eschpo.cut  Espu.cut</pre></td></tr></table><p><p><p><p><b>Example 3</b><p>Make a copy of an EMBOSS data file in the current directory: <p><p><table width="90%"><tr><td bgcolor="#CCFFFF"><pre>% <b>embossdata -fetch Epepcoil.dat </b>Finds or fetches data files read by EMBOSS programsFile '/homes/pmr/local/share/EMBOSS/data/Epepcoil.dat' has been copied successfully.</pre></td></tr></table><p><p><a href="#output.3">Go to the output files for this example</a><p><p><p><b>Example 4</b><p>Display the directories which contain a particular EMBOSS data file: <p><p><table width="90%"><tr><td bgcolor="#CCFFFF"><pre>% <b>embossdata EPAM60 </b>Finds or fetches data files read by EMBOSS programs# The following directories can contain EMBOSS data files.# They are searched in the following order until the file is found.# If the directory does not exist, then this is noted below.# '.' is the UNIX name for your current working directory.File ./EPAM60                                                     Does not existFile .embossdata/EPAM60                                           Does not existFile /homes/pmr/EPAM60                                            Does not existFile /homes/pmr/.embossdata/EPAM60                                Does not existFile /homes/pmr/local/share/EMBOSS/data/EPAM60                    Exists</pre></td></tr></table><p><p><p>

embossdata.usage - 源码说明

本页面展示了「emboss的linux版本的源代码」中的 embossdata.usage 源码文件，采用 USAGE 编程语言编写，共 539 行代码。您可以在线阅读完整代码内容，也可以返回资源详情页下载完整源码包进行本地学习和开发。

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