emowse.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: 100k_rat.emowse</h3>
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<pre>

Using data fragments of:
          1086.2  
          1399.6  
          2030.2  
          2424.7  
          2930.3  
          3086.3  
          5423.0  
          6082.8  

1   100K_RAT     100 KDA PROTEIN (EC 6.3.2.-).                                 
2   SYV_FUGRU    VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE--TRNA LIGASE) (VALR
3   TCPD_FUGRU   T-COMPLEX PROTEIN 1, DELTA SUBUNIT (TCP-1-DELTA) (CCT-DELTA). 
4   FLAV_ECOLI   FLAVODOXIN 1.                                                 
5   OPS2_DROME   OPSIN RH2 (OCELLAR OPSIN).                                    
6   FLAV_KLEPN   FLAVODOXIN.                                                   
7   FLAV_SYNY3   FLAVODOXIN.                                                   
8   E2BB_FUGRU   TRANSLATION INITIATION FACTOR EIF-2B BETA SUBUNIT (EIF-2B GDP-
9   FLAV_HAEIN   FLAVODOXIN.                                                   
10  HIRA_FUGRU   HIRA PROTEIN (TUP1 LIKE ENHANCER OF SPLIT PROTEIN 1).         
11  OPS2_SCHGR   OPSIN 2.                                                      
12  HBA_HUMAN    HEMOGLOBIN ALPHA CHAIN.                                       
13  LACY_ECOLI   LACTOSE PERMEASE (LACTOSE-PROTON SYMPORT).                    
14  FLAV_CLOAB   FLAVODOXIN.                                                   
15  PAX3_HUMAN   PAIRED BOX PROTEIN PAX-3 (HUP2).                              
16  PAX4_HUMAN   PAIRED BOX PROTEIN PAX-4.                                     
17  CO9_FUGRU    COMPLEMENT COMPONENT C9 PRECURSOR.                            
18  SYH_FUGRU    HISTIDYL-TRNA SYNTHETASE (EC 6.1.1.21) (HISTIDINE--TRNA LIGASE
19  BGAL_ECOLI   BETA-GALACTOSIDASE (EC 3.2.1.23) (LACTASE).                   
20  HD_FUGRU     HUNTINGTIN (HUNTINGTON'S DISEASE PROTEIN HOMOLOG) (HD PROTEIN)

    1  : 100K_RAT       1.277e+06 100368.6   0.750 
         100 KDA PROTEIN (EC 6.3.2.-).
         Mw     Start  End    Seq
         1086.3 358    367    CATTPMAVHR                                   
         1399.6 6      17     GDFLNYALSLMR                                 
         2424.7 290    312    VFMEDVGAEPGSILTELGGFEVK                      
         2930.3 671    698    QLILASQSSDADAVFSAMDLAFAVDLCK                 
         3086.3 458    485    QLSIDTRPFRPASEGNPSDDPDPLPAHR                 
        *6082.8 817    870    QDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISR...
         No Match      2030.2 5423.0 

    2  : SYV_FUGRU      3.791e+01 138217.9   0.375 
         VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE--TRNA LIGASE) (VALRS).
         Mw     Start  End    Seq
         1087.3 510    518    TVLHPFCDR                                    
        *1399.6 1184   1195   VPVKVQEQDTEK                                 
         2425.7 321    343    GETTLWNPGCDHAGIATQVVVEK                      
         No Match      2030.2 2930.3 3086.3 5423.0 6082.8 


<font color=red>  [Part of this file has been deleted for brevity]</font>

         No Match      1399.6 2030.2 2424.7 2930.3 3086.3 5423.0 6082.8 

    13 : LACY_ECOLI     5.070e+00 46503.1    0.125 
         LACTOSE PERMEASE (LACTOSE-PROTON SYMPORT).
         Mw     Start  End    Seq
        *3088.7 290    319    NALLLAGTIMSVRIIGSSFATSALEVVILK               
         No Match      1086.2 1399.6 2030.2 2424.7 2930.3 5423.0 6082.8 

    14 : FLAV_CLOAB     4.938e+00 17763.3    0.125 
         FLAVODOXIN.
         Mw     Start  End    Seq
        *1085.3 17     26     VAKLIEEGVK                                   
         No Match      1399.6 2030.2 2424.7 2930.3 3086.3 5423.0 6082.8 

    15 : PAX3_HUMAN     3.494e+00 52967.4    0.125 
         PAIRED BOX PROTEIN PAX-3 (HUP2).
         Mw     Start  End    Seq
        *2930.3 11     37     MMRPGPGQNYPRSGFPLEVSTPLGQGR                  
         No Match      1086.2 1399.6 2030.2 2424.7 3086.3 5423.0 6082.8 

    16 : PAX4_HUMAN     3.488e+00 37832.6    0.125 
         PAIRED BOX PROTEIN PAX-4.
         Mw     Start  End    Seq
        *2029.4 28     45     QQIVRLAVSGMRPCDISR                           
         No Match      1086.2 1399.6 2424.7 2930.3 3086.3 5423.0 6082.8 

    17 : CO9_FUGRU      3.007e+00 65197.8    0.125 
         COMPLEMENT COMPONENT C9 PRECURSOR.
         Mw     Start  End    Seq
        *2930.2 135    162    TCPPTVLDTNEQGRTAGYGINILGADPR                 
         No Match      1086.2 1399.6 2030.2 2424.7 3086.3 5423.0 6082.8 

    18 : SYH_FUGRU      2.821e+00 57912.8    0.125 
         HISTIDYL-TRNA SYNTHETASE (EC 6.1.1.21) (HISTIDINE--TRNA LIGASE) (HISRS).
         Mw     Start  End    Seq
         1087.2 124    133    DQGGELLSLR                                   
         No Match      1399.6 2030.2 2424.7 2930.3 3086.3 5423.0 6082.8 

    19 : BGAL_ECOLI     2.283e+00 116351.4   0.125 
         BETA-GALACTOSIDASE (EC 3.2.1.23) (LACTASE).
         Mw     Start  End    Seq
         1400.6 600    611    QFCMNGLVFADR                                 
         No Match      1086.2 2030.2 2424.7 2930.3 3086.3 5423.0 6082.8 

    20 : HD_FUGRU       2.169e+00 348935.6   0.375 
         HUNTINGTIN (HUNTINGTON'S DISEASE PROTEIN HOMOLOG) (HD PROTEIN).
         Mw     Start  End    Seq
        *1400.6 2899   2911   VDGEALVKLSVDR                                
        *2031.3 645    663    LLSASFLLTGQKNGLTPDR                          
        *3085.6 1573   1597   LVQYHQVLEMFILVLQQCHKENEDK                    
         No Match      1086.2 2424.7 2930.3 5423.0 6082.8 
</pre>
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