prophet.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: hd_fugru.prophet</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
########################################
# Program: prophet
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: prophet
#    -sequence "tsw:h*"
#    -infile ../../data/globins.gribskov
# Align_format: simple
# Report_file: hd_fugru.prophet
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: globins
# 2: HD_FUGRU
# Matrix: EBLOSUM62
#
# Length: 167
# Identity:      20/167 (12.0%)
# Similarity:    46/167 (27.5%)
# Gaps:           6/167 ( 3.6%)
# Score: 74.34
# 
#
#=======================================

globins            3 VDTGSV-VSLS-EEELSAVDKAWVKANSVAEVGGHALERGLFASEPMTLE     50
                     :....| ..|| .|..:.........:.:......:....|...|....:
HD_FUGRU        2289 LQQPCVWNKLSTPEYNTHTCSLIYCLHHIILAVAVSPGDQLLHPERKKTK   2338

globins           51 FFDTFKYLSTFDLSKGSADVKAHGKKVLDALGDAVAHLDDLEGT-LAALS     99
                     ...........|....:..::....:::..|.:.:..:..|... ..|..
HD_FUGRU        2339 ALRHSDDEDQVDSVHDNHTLEWQACEIMAELVEGLQSVLSLGHHRNTAFP   2388

globins          100 DLHAHKLKKGVDPVNFKLLSHCLLVVLASHLPGDFTPEVQASMDKFLASV    149
                     ......|:..:..::...|.:....|........::|:........|..:
HD_FUGRU        2389 AFLTPTLRNIIISLSRLPLVNSHTRVPPLVWKLGWSPQPGGEFGTTLPEI   2438

globins          150 ATV-LASK--YRELGYQ    163
                     ... |..|  :||..|:
HD_FUGRU        2439 PVDFLQEKDVFREFLYR   2455


#=======================================
#
# Aligned_sequences: 2
# 1: globins
# 2: HIRA_FUGRU
# Matrix: EBLOSUM62
#


<font color=red>  [Part of this file has been deleted for brevity]</font>

#
#=======================================

globins           15 ELSAVDKAWVKAN-SVAEVGGHALERGLFASEPMTLEFFDTFKYLSTFDL     63
                     .||..||..|||. . .:||.||.|.|..|.|.|.|.|..|..|...|||
HBA_HUMAN          1 VLSPADKTNVKAAWG-GKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDL     49

globins           64 SKGSADVKAHGKKVLDALGDAVAHLDDLEGTLAALSDLHAHKLK-KGVDP    112
                     |.|||.||.|||||.|||.:||||:||:...|:||||||||||: .  ||
HBA_HUMAN         50 SHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVD--DP     97

globins          113 VNFKLLSHCLLVVLASHLPGDFTPEVQASMDKFLASVATVLASKYR    158
                     ||||||||||||.||:|||.:|||.|.||:|||||||:|||.||||
HBA_HUMAN         98 VNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR    143


#=======================================
#
# Aligned_sequences: 2
# 1: globins
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
#
# Length: 153
# Identity:      77/153 (50.3%)
# Similarity:    91/153 (59.5%)
# Gaps:           7/153 ( 4.6%)
# Score: 178.29
# 
#
#=======================================

globins            9 VSLSEEELSAVDKAWVKAN-SVAEVGGHALE-RGLFASEPMTLEFFDTFK     56
                     |.|:.||.|||...|.|.| . .||||.||. . |....|.|..||::|.
HBB_HUMAN          1 VHLTPEEKSAVTALWGKVNVD-DEVGGEALGRL-LLVVYPWTQRFFESFG     48

globins           57 YLSTFDLSKGSADVKAHGKKVLDALGDAVAHLDDLEGTLAALSDLHAHKL    106
                     .|||.|...|:..|||||||||.|..|.:||||:|:||.|.||:||..||
HBB_HUMAN         49 DLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKL     98

globins          107 K-KGVDPVNFKLLSHCLLVVLASHLPGDFTPEVQASMDKFLASVATVLAS    155
                     . .  ||.||:||.:.|:.|||.|...:|||.|||:..|.:|.||..||.
HBB_HUMAN         99 HVD--DPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAH    146

globins          156 KYR    158
                     ||.
HBB_HUMAN        147 KYH    149


#---------------------------------------
#---------------------------------------
</pre>
</td></tr></table><p>