fuzznuc.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: hhtetra.fuzznuc</h3>
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<pre>
########################################
# Program: fuzznuc
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: fuzznuc
#    -sequence tembl:hhtetra
#    -pattern AAGCTT
# Report_format: seqtable
# Report_file: hhtetra.fuzznuc
########################################

#=======================================
#
# Sequence: HHTETRA     from: 1   to: 1272
# HitCount: 2
#
# Pattern_name Mismatch Pattern
# pattern1            0 AAGCTT
# 
# Complement: No
#
#=======================================

  Start     End Pattern_name Mismatch Sequence
      1       6 pattern1            . aagctt
   1267    1272 pattern1            . aagctt

#---------------------------------------
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 2
#---------------------------------------
</pre>
</td></tr></table><p>

<a name="output.2"></a>
<h3>Output files for usage example 2</h3>
<p><h3>File: hhtetra.fuzznuc</h3>
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<pre>
########################################
# Program: fuzznuc
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: fuzznuc
#    -sequence tembl:hhtetra
#    -pattern @../../data/nucseq.pat
# Report_format: seqtable
# Report_file: hhtetra.fuzznuc
########################################

#=======================================
#
# Sequence: HHTETRA     from: 1   to: 1272
# HitCount: 2
#
# Pattern_name Mismatch Pattern
# targetseq           0 cg(2)c(3)taaccctagc(3)ta
# 
# Complement: No
#
#=======================================

  Start     End Pattern_name Mismatch Sequence
    429     448 targetseq           . cggccctaaccctagcccta
    491     510 targetseq           . cggccctaaccctagcccta

#---------------------------------------
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 2
#---------------------------------------
</pre>
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<a name="output.3"></a>
<h3>Output files for usage example 3</h3>
<p><h3>File: hhtetra.fuzznuc</h3>
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<pre>
########################################
# Program: fuzznuc
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: fuzznuc
#    -pname test
#    -sequence tembl:hhtetra
#    -pattern @../../data/nucsimple.pat
# Report_format: seqtable
# Report_file: hhtetra.fuzznuc
########################################

#=======================================
#
# Sequence: HHTETRA     from: 1   to: 1272
# HitCount: 13
#
# Pattern_name Mismatch Pattern
# test1               0 cg(2)c(3)taac
# test2               0 cctagc(3)ta
# 
# Complement: No
#
#=======================================

  Start     End Pattern_name Mismatch Sequence
    429     438 test1               . cggccctaac
    491     500 test1               . cggccctaac
    535     544 test1               . cggccctaac
    605     614 test1               . cggccctaac
    631     640 test1               . cggccctaac
    695     704 test1               . cggccctaac
    721     730 test1               . cggccctaac
    753     762 test1               . cggccctaac
    293     302 test2               . cctagcccta
    439     448 test2               . cctagcccta
    469     478 test2               . cctagcccta
    501     510 test2               . cctagcccta
    801     810 test2               . cctagcccta

#---------------------------------------
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 13
#---------------------------------------
</pre>
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<a name="output.4"></a>
<h3>Output files for usage example 4</h3>
<p><h3>File: hhtetra.fuzznuc</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
########################################
# Program: fuzznuc
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: fuzznuc
#    -sequence tembl:hhtetra
#    -pattern @../../data/nuc.pat
# Report_format: seqtable
# Report_file: hhtetra.fuzznuc
########################################

#=======================================
#
# Sequence: HHTETRA     from: 1   to: 1272
# HitCount: 19
#
# Pattern_name Mismatch Pattern
# pat1                0 cggccctaaccctagcccta
# pat2                1 cg(2)c(3)taaccctagc(3)ta
# pat3                0 cggc(2,4)taac(2,5)
# 
# Complement: No
#
#=======================================

  Start     End Pattern_name Mismatch Sequence
    429     448 pat1                . cggccctaaccctagcccta
    491     510 pat1                . cggccctaaccctagcccta
    429     448 pat2                . cggccctaaccctagcccta
    491     510 pat2                . cggccctaaccctagcccta
    535     554 pat2                1 cggccctaaccctaacccta
    605     624 pat2                1 cggccctaaccctaacccta
    631     650 pat2                1 cggccctaaccctaacccta
    695     714 pat2                1 cggccctaaccctaacccta
    721     740 pat2                1 cggccctaaccctaacccta
    753     772 pat2                1 cggccctaaccctaacccta
    791     810 pat2                1 cggcccgaaccctagcccta
    429     440 pat3                . cggccctaaccc
    491     502 pat3                . cggccctaaccc
    535     546 pat3                . cggccctaaccc
    605     616 pat3                . cggccctaaccc
    631     642 pat3                . cggccctaaccc
    695     706 pat3                . cggccctaaccc
    721     732 pat3                . cggccctaaccc
    753     764 pat3                . cggccctaaccc

#---------------------------------------
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 19
#---------------------------------------
</pre>
</td></tr></table><p>