remap.usage

emboss的linux版本的源代码

<b>Here is a sample session with remap</b>
<p>
This example uses only a small region of the input sequence to save space. This is run with a small test version of the restriction enzyme database and so you will probably see more enzymes when you run this. 
<p>

<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>remap -notran -sbeg 1 -send 60 </b>
Display sequence with restriction sites, translation etc.
Input nucleotide sequence(s): <b>tembl:eclac</b>
Comma separated enzyme list [all]: <b>taqi,bsu6i,acii,bsski</b>
Minimum recognition site length [4]: <b></b>
Output file [eclac.remap]: <b></b>

</pre></td></tr></table><p>
<p>
<a href="#input.1">Go to the input files for this example</a><br><a href="#output.1">Go to the output files for this example</a><p><p>
<p>
<b>Example 2</b>
<p>
This is an example where all enzymes in the REBASE database are used, (but only the prototypes of the isoschizomers are reported by default). This is run with a small test version of the restriction enzyme database and so you will probably see more enzymes when you run this. 
<p>

<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>remap -notran -sbeg 1 -send 60 </b>
Display sequence with restriction sites, translation etc.
Input nucleotide sequence(s): <b>tembl:eclac</b>
Comma separated enzyme list [all]: <b></b>
Minimum recognition site length [4]: <b></b>
Output file [eclac.remap]: <b></b>

</pre></td></tr></table><p>
<p>
<a href="#output.2">Go to the output files for this example</a><p><p>
<p>
<b>Example 3</b>
<p>
This is an example where all enzymes in the REBASE database are used but the -limit qualifier is not set so that all of the enzymes are displayed and not just only the prototypes of the isoschizomers. This is run with a small test version of the restriction enzyme database and so you will probably see more enzymes when you run this. 
<p>

<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>remap -notran -sbeg 1 -send 60 -nolimit </b>
Display sequence with restriction sites, translation etc.
Input nucleotide sequence(s): <b>tembl:eclac</b>
Comma separated enzyme list [all]: <b></b>
Minimum recognition site length [4]: <b></b>
Output file [eclac.remap]: <b></b>

</pre></td></tr></table><p>
<p>
<a href="#output.3">Go to the output files for this example</a><p><p>
<p>
<b>Example 4</b>
<p>
This shows the 'flat' format: This is run with a small test version of the restriction enzyme database and so you will probably see more enzymes when you run this. 
<p>

<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>remap -notran -sbeg 1 -send 60 -flat </b>
Display sequence with restriction sites, translation etc.
Input nucleotide sequence(s): <b>tembl:eclac</b>
Comma separated enzyme list [all]: <b></b>
Minimum recognition site length [4]: <b></b>
Output file [eclac.remap]: <b></b>

</pre></td></tr></table><p>
<p>
<a href="#output.4">Go to the output files for this example</a><p><p>