📄 compseq.output

📁 emboss的linux版本的源代码
💻 OUTPUT
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<a name="output.1"></a><h3>Output files for usage example </h3><p><h3>File: result3.comp</h3><table width="90%"><tr><td bgcolor="#CCFFCC"><pre>## Output from 'compseq'## The Expected frequencies are calculated on the (false) assumption that every# word has equal frequency.## The input sequences are:#	HSFAUWord size	2Total count	517## Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency#AA	45		0.0870406	0.0625000	1.3926499AC	20		0.0386847	0.0625000	0.6189555AG	45		0.0870406	0.0625000	1.3926499AT	14		0.0270793	0.0625000	0.4332689CA	34		0.0657640	0.0625000	1.0522244CC	43		0.0831721	0.0625000	1.3307544CG	25		0.0483559	0.0625000	0.7736944CT	37		0.0715667	0.0625000	1.1450677GA	31		0.0599613	0.0625000	0.9593810GC	43		0.0831721	0.0625000	1.3307544GG	46		0.0889749	0.0625000	1.4235977GT	28		0.0541586	0.0625000	0.8665377TA	15		0.0290135	0.0625000	0.4642166TC	33		0.0638298	0.0625000	1.0212766TG	32		0.0618956	0.0625000	0.9903288TT	26		0.0502901	0.0625000	0.8046422Other	0		0.0000000	0.0000000	10000000000.0000000</pre></td></tr></table><p><a name="output.2"></a><h3>Output files for usage example 2</h3><p><h3>File: result6.comp</h3><table width="90%"><tr><td bgcolor="#CCFFCC"><pre>## Output from 'compseq'## Words with a frequency of zero are not reported.# The Expected frequencies are calculated on the (false) assumption that every# word has equal frequency.## The input sequences are:#	HSFAUWord size	6Total count	513## Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency#AAAAAA	6		0.0116959	0.0002441	47.9064327AAAAAG	1		0.0019493	0.0002441	7.9844055AAAAGC	1		0.0019493	0.0002441	7.9844055AAAAGT	1		0.0019493	0.0002441	7.9844055AAACAG	1		0.0019493	0.0002441	7.9844055AAACGG	1		0.0019493	0.0002441	7.9844055AAAGCC	1		0.0019493	0.0002441	7.9844055AAAGTG	1		0.0019493	0.0002441	7.9844055AAAGTT	1		0.0019493	0.0002441	7.9844055AACAGG	1		0.0019493	0.0002441	7.9844055AACCGG	1		0.0019493	0.0002441	7.9844055AACGGT	1		0.0019493	0.0002441	7.9844055AACGTT	1		0.0019493	0.0002441	7.9844055AACTCT	1		0.0019493	0.0002441	7.9844055AAGAAG	6		0.0116959	0.0002441	47.9064327AAGACA	1		0.0019493	0.0002441	7.9844055AAGATC	1		0.0019493	0.0002441	7.9844055AAGCCA	1		0.0019493	0.0002441	7.9844055AAGCGG	1		0.0019493	0.0002441	7.9844055AAGGCT	1		0.0019493	0.0002441	7.9844055AAGGGC	1		0.0019493	0.0002441	7.9844055AAGGTG	1		0.0019493	0.0002441	7.9844055AAGTAG	1		0.0019493	0.0002441	7.9844055AAGTCG	1		0.0019493	0.0002441	7.9844055AAGTCT	1		0.0019493	0.0002441	7.9844055AAGTGA	1		0.0019493	0.0002441	7.9844055AAGTTC	1		0.0019493	0.0002441	7.9844055AATAAA	1		0.0019493	0.0002441	7.9844055AATATG	1		0.0019493	0.0002441	7.9844055AATGCC	1		0.0019493	0.0002441	7.9844055AATTCT	1		0.0019493	0.0002441	7.9844055ACAACC	1		0.0019493	0.0002441	7.9844055ACACAC	1		0.0019493	0.0002441	7.9844055<font color=red>  [Part of this file has been deleted for brevity]</font>TGAGGC	1		0.0019493	0.0002441	7.9844055TGCAGC	1		0.0019493	0.0002441	7.9844055TGCAGT	1		0.0019493	0.0002441	7.9844055TGCCAA	1		0.0019493	0.0002441	7.9844055TGCCCA	1		0.0019493	0.0002441	7.9844055TGCCCC	1		0.0019493	0.0002441	7.9844055TGCGGG	1		0.0019493	0.0002441	7.9844055TGCTCC	1		0.0019493	0.0002441	7.9844055TGCTGG	1		0.0019493	0.0002441	7.9844055TGCTTG	1		0.0019493	0.0002441	7.9844055TGGAAA	1		0.0019493	0.0002441	7.9844055TGGAAG	1		0.0019493	0.0002441	7.9844055TGGAGG	4		0.0077973	0.0002441	31.9376218TGGCAA	1		0.0019493	0.0002441	7.9844055TGGCAG	1		0.0019493	0.0002441	7.9844055TGGCCA	1		0.0019493	0.0002441	7.9844055TGGCCC	1		0.0019493	0.0002441	7.9844055TGGCTT	1		0.0019493	0.0002441	7.9844055TGGGAC	1		0.0019493	0.0002441	7.9844055TGGGCC	1		0.0019493	0.0002441	7.9844055TGGTTC	1		0.0019493	0.0002441	7.9844055TGTAAT	1		0.0019493	0.0002441	7.9844055TGTAGC	1		0.0019493	0.0002441	7.9844055TGTCAA	1		0.0019493	0.0002441	7.9844055TGTCCG	1		0.0019493	0.0002441	7.9844055TGTGCC	1		0.0019493	0.0002441	7.9844055TTAAGT	1		0.0019493	0.0002441	7.9844055TTAGTT	1		0.0019493	0.0002441	7.9844055TTCAGT	2		0.0038986	0.0002441	15.9688109TTCATG	1		0.0019493	0.0002441	7.9844055TTCCCT	1		0.0019493	0.0002441	7.9844055TTCCTC	1		0.0019493	0.0002441	7.9844055TTCGAG	1		0.0019493	0.0002441	7.9844055TTCGCG	1		0.0019493	0.0002441	7.9844055TTCTCG	1		0.0019493	0.0002441	7.9844055TTCTCT	1		0.0019493	0.0002441	7.9844055TTCTGG	1		0.0019493	0.0002441	7.9844055TTGCCC	1		0.0019493	0.0002441	7.9844055TTGGAG	1		0.0019493	0.0002441	7.9844055TTGGCA	1		0.0019493	0.0002441	7.9844055TTGTAA	1		0.0019493	0.0002441	7.9844055TTGTCA	1		0.0019493	0.0002441	7.9844055TTGTCC	1		0.0019493	0.0002441	7.9844055TTGTGC	1		0.0019493	0.0002441	7.9844055TTTCTC	2		0.0038986	0.0002441	15.9688109TTTGGC	1		0.0019493	0.0002441	7.9844055TTTGTA	1		0.0019493	0.0002441	7.9844055TTTGTC	2		0.0038986	0.0002441	15.9688109TTTTGT	1		0.0019493	0.0002441	7.9844055Other	0		0.0000000	0.0000000	10000000000.0000000</pre></td></tr></table><p><a name="output.3"></a><h3>Output files for usage example 3</h3><p><h3>File: result3.comp</h3><table width="90%"><tr><td bgcolor="#CCFFCC"><pre>## Output from 'compseq'## Only words in frame 2 will be counted.# The Expected frequencies are taken from the file: ../../data/prev.comp## The input sequences are:#	HSFAUWord size	3Total count	172## Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency#AAA	7		0.0406977	0.0329457	1.2352955AAC	3		0.0174419	0.0096899	1.8000042AAG	11		0.0639535	0.0348837	1.8333344AAT	3		0.0174419	0.0077519	2.2500110ACA	1		0.0058140	0.0096899	0.6000014ACC	4		0.0232558	0.0116279	2.0000012ACG	1		0.0058140	0.0038760	1.4999880ACT	3		0.0174419	0.0135659	1.2857135AGA	1		0.0058140	0.0232558	0.2500002AGC	2		0.0116279	0.0135659	0.8571423AGG	0		0.0000000	0.0310078	0.0000000AGT	0		0.0000000	0.0193798	0.0000000ATA	0		0.0000000	0.0038760	0.0000000ATC	1		0.0058140	0.0058140	0.9999920ATG	3		0.0174419	0.0135659	1.2857135ATT	1		0.0058140	0.0038760	1.4999880CAA	1		0.0058140	0.0193798	0.3000007CAC	2		0.0116279	0.0116279	1.0000006CAG	9		0.0523256	0.0251938	2.0769229CAT	3		0.0174419	0.0096899	1.8000042CCA	0		0.0000000	0.0232558	0.0000000CCC	3		0.0174419	0.0251938	0.6923076CCG	1		0.0058140	0.0155039	0.3749994CCT	2		0.0116279	0.0193798	0.6000014CGA	1		0.0058140	0.0038760	1.4999880CGC	5		0.0290698	0.0193798	1.5000035CGG	4		0.0232558	0.0174419	1.3333303CGT	2		0.0116279	0.0077519	1.5000074CTA	1		0.0058140	0.0096899	0.6000014CTC	4		0.0232558	0.0213178	1.0909106CTG	7		0.0406977	0.0193798	2.1000049CTT	3		0.0174419	0.0213178	0.8181829GAA	3		0.0174419	0.0213178	0.8181829GAC	1		0.0058140	0.0116279	0.5000003GAG	7		0.0406977	0.0193798	2.1000049GAT	2		0.0116279	0.0077519	1.5000074GCA	2		0.0116279	0.0135659	0.8571423GCC	10		0.0581395	0.0348837	1.6666677GCG	1		0.0058140	0.0155039	0.3749994GCT	3		0.0174419	0.0193798	0.9000021GGA	2		0.0116279	0.0251938	0.4615384GGC	8		0.0465116	0.0329457	1.4117663GGG	1		0.0058140	0.0135659	0.4285712GGT	5		0.0290698	0.0174419	1.6666629GTA	2		0.0116279	0.0116279	1.0000006GTC	6		0.0348837	0.0174419	1.9999955GTG	6		0.0348837	0.0155039	2.2499965GTT	3		0.0174419	0.0096899	1.8000042TAA	3		0.0174419	0.0135659	1.2857135TAC	1		0.0058140	0.0058140	0.9999920TAG	0		0.0000000	0.0077519	0.0000000TAT	0		0.0000000	0.0019380	0.0000000TCA	3		0.0174419	0.0193798	0.9000021TCC	1		0.0058140	0.0116279	0.5000003TCG	0		0.0000000	0.0135659	0.0000000TCT	3		0.0174419	0.0193798	0.9000021TGA	0		0.0000000	0.0077519	0.0000000TGC	1		0.0058140	0.0174419	0.3333326TGG	1		0.0058140	0.0271318	0.2142856TGT	1		0.0058140	0.0096899	0.6000014TTA	1		0.0058140	0.0038760	1.4999880TTC	1		0.0058140	0.0193798	0.3000007TTG	0		0.0000000	0.0135659	0.0000000TTT	5		0.0290698	0.0135659	2.1428558Other	0		0.0000000	0.0000000	10000000000.0000000</pre></td></tr></table><p>
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