prophecy.usage

来自「emboss的linux版本的源代码」· USAGE 代码 · 共 46 行

<b>Here is a sample session with prophecy</b>
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% <b>prophecy </b>
Creates matrices/profiles from multiple alignments
Input (aligned) sequence set: <b>globins.msf</b>
Profile type
         F : Frequency
         G : Gribskov
         H : Henikoff
Select type [F]: <b></b>
Enter a name for the profile [mymatrix]: <b>globins</b>
Enter threshold reporting percentage [75]: <b></b>
Output file [globins.prophecy]: <b></b>

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<a href="#input.1">Go to the input files for this example</a><br><a href="#output.1">Go to the output files for this example</a><p><p>
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<b>Example 2</b>
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<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>prophecy </b>
Creates matrices/profiles from multiple alignments
Input (aligned) sequence set: <b>globins.msf</b>
Profile type
         F : Frequency
         G : Gribskov
         H : Henikoff
Select type [F]: <b>g</b>
Scoring matrix [Epprofile]: <b></b>
Enter a name for the profile [mymatrix]: <b>globins</b>
Gap opening penalty [3.0]: <b></b>
Gap extension penalty [0.3]: <b></b>
Output file [globins.prophecy]: <b></b>

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<p>
<a href="#output.2">Go to the output files for this example</a><p><p>