antigenic.input

emboss的linux版本的源代码

<a name="input.1"></a>
<h3>Input files for usage example </h3>

'tsw:act1_fugru' is a sequence entry in the example protein database 'tsw'
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<p><h3>Database entry: tsw:act1_fugru</h3>
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ID   ACT1_FUGRU     STANDARD;      PRT;   375 AA.
AC   P53484;
DT   01-OCT-1996 (REL. 34, CREATED)
DT   01-OCT-1996 (REL. 34, LAST SEQUENCE UPDATE)
DT   01-OCT-1996 (REL. 34, LAST ANNOTATION UPDATE)
DE   ACTIN, CYTOPLASMIC 1 (BETA-ACTIN 1).
OS   FUGU RUBRIPES (JAPANESE PUFFERFISH) (TAKIFUGU RUBRIPES).
OC   EUKARYOTA; METAZOA; CHORDATA; VERTEBRATA; PISCES; GNATHOSTOMATA;
OC   OSTEICHTHYES; ACTINOPTERYGII; TETRAODONTIFORMES.
RN   [1]
RP   SEQUENCE FROM N.A.
RX   MEDLINE; 96275651.
RA   VENKATESH B., TAY B.H., ELGAR G., BRENNER S.;
RL   J. MOL. BIOL. 259:655-665(1996).
CC   -!- FUNCTION: ACTINS ARE HIGHLY CONSERVED PROTEINS THAT ARE INVOLVED
CC       IN VARIOUS TYPES OF CELL MOTILITY AND ARE UBIQUITOUSLY EXPRESSED
CC       IN ALL EUKARYOTIC CELLS.
CC   -!- SUBUNIT: POLYMERIZATION OF GLOBULAR ACTIN (G-ACTIN) LEADS TO A
CC       STRUCTURAL FILAMENT (F-ACTIN) IN THE FORM OF A TWO-STRANDED
CC       HELIX. EACH ACTIN CAN BIND TO 4 OTHERS.
CC   -!- SUBCELLULAR LOCATION: CYTOPLASMIC.
CC   -!- TISSUE SPECIFICITY: WIDELY DISTRIBUTED. NOT EXPRESSED IN SKELETAL
CC       MUSCLE.
CC   -!- IN VERTEBRATES 3 MAIN GROUPS OF ACTIN ISOFORMS, ALPHA, BETA AND
CC       GAMMA HAVE BEEN IDENTIFIED. THE ALPHA ACTINS ARE FOUND IN MUSCLE
CC       TISSUES AND ARE A MAJOR CONSTITUENT OF THE CONTRACTILE APPARATUS.
CC       THE BETA AND GAMMA ACTINS CO-EXISTS IN MOST CELL TYPES AS
CC       COMPONENTS OF THE CYTOSKELETON AND AS MEDIATORS OF INTERNAL CELL
CC       MOTILITY.
CC   -!- THERE ARE THREE DIFFERENT BETA-CYTOPLASMIC ACTINS IN FUGU
CC       RUBRIPES.
DR   EMBL; U37499; G1335821; -.
DR   PROSITE; PS00406; ACTINS_1; 1.
DR   PROSITE; PS00432; ACTINS_2; 1.
DR   PROSITE; PS01132; ACTINS_ACT_LIKE; 1.
KW   MULTIGENE FAMILY; STRUCTURAL PROTEIN; METHYLATION; ACETYLATION;
KW   CYTOSKELETON.
FT   PROPEP        1      1       REMOVED IN MATURE FORM (BY SIMILARITY).
FT   CHAIN         2    375       ACTIN, CYTOPLASMIC 1.
FT   MOD_RES       1      1       ACETYLATION (BY SIMILARITY).
FT   MOD_RES       2      2       ACETYLATION (BY SIMILARITY).
FT   MOD_RES      73     73       METHYLATION (BY SIMILARITY).
SQ   SEQUENCE   375 AA;  41766 MW;  3A0543DF CRC32;
     MEDEIAALVV DNGSGMCKAG FAGDDAPRAV FPSIVGRPRH QGVMVGMGQK DSYVGDEAQS
     KRGILTLKYP IEHGIVTNWD DMEKIWHHTF YNELRVAPEE HPVLLTEAPL NPKANREKMT
     QIMFETFNTP AMYVAIQAVL SLYASGRTTG IVMDSGDGVT HTVPIYEGYA LPHAILRLDL
     AGRDLTDYLM KILTERGYSF TTTAEREIVR DIKEKLCYVA LDFEQEMGTA ASSSSLEKSY
     ELPDGQVITI GNERFRCPEA LFQPSFLGME SCGIHETTYN SIMKCDVDIR KDLYANTVLS
     GGTTMYPGIA DRMQKEITAL APSTMKIKII APPERKYSVW IGGSILASLS TFQQMWISKQ
     EYDESGPSIV HRKCF
//
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