📄 megamerger.output

📁 emboss的linux版本的源代码
💻 OUTPUT
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<a name="output.1"></a><h3>Output files for usage example </h3><p><h3>File: report</h3><table width="90%"><tr><td bgcolor="#CCFFCC"><pre># Report of megamerger of: AP000504 and AF129756AP000504 overlap starts at 1AF129756 overlap starts at 6036Using AF129756 1-6035 as the initial sequenceMatching region AP000504 1-846 : AF129756 6036-6881Length of match: 846WARNING!Mismatch region found:Mismatch AP000504 847-847Mismatch AF129756 6882-6882Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 848-1794 : AF129756 6883-7829Length of match: 947WARNING!Mismatch region found:Mismatch AP000504 1795-1795Mismatch AF129756 7830-7830Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 1796-2272 : AF129756 7831-8307Length of match: 477WARNING!Mismatch region found:Mismatch AP000504 2273-2273Mismatch AF129756 8307Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 2274-2465 : AF129756 8308-8499Length of match: 192WARNING!Mismatch region found:Mismatch AP000504 2466-2466Mismatch AF129756 8500-8500Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 2467-2654 : AF129756 8501-8688Length of match: 188WARNING!Mismatch region found:Mismatch AP000504 2655-2658Mismatch AF129756 8688<font color=red>  [Part of this file has been deleted for brevity]</font>WARNING!Mismatch region found:Mismatch AP000504 95451-95451Mismatch AF129756 101481-101481Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 95452-96649 : AF129756 101482-102679Length of match: 1198WARNING!Mismatch region found:Mismatch AP000504 96650-96650Mismatch AF129756 102680-102680Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 96651-97272 : AF129756 102681-103302Length of match: 622WARNING!Mismatch region found:Mismatch AP000504 97273-97274Mismatch AF129756 103302Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 97275-97715 : AF129756 103303-103743Length of match: 441WARNING!Mismatch region found:Mismatch AP000504 97716-97716Mismatch AF129756 103744-103744Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 97717-97826 : AF129756 103745-103854Length of match: 110WARNING!Mismatch region found:Mismatch AP000504 97827-97827Mismatch AF129756 103855-103855Mismatch is closer to the ends of AP000504, so use AF129756 in the merged sequenceMatching region AP000504 97828-100000 : AF129756 103856-106028Length of match: 2173AP000504 overlap ends at 100000AF129756 overlap ends at 106028Using AF129756 106029-184666 as the final sequence</pre></td></tr></table><p><p><h3>File: ap000504.merged</h3><table width="90%"><tr><td bgcolor="#CCFFCC"><pre>&gt;AP000504 AP000504.1 Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region, section 3/20.gaattctctccctcccatctgtggctgagattaaagatctgcacctgaagcactgaagaatgtgtgggtaattaaattaccctgccgattcctggagatgctgattacctggagatgacctcagagattatcctaaattaactcctacaagacacacattgcagcgggaggtgaggtaggggaaggattgtgcacctgaggctagcaaaggtttccactctgtttagagatgatgtcaccagtgcgtttacatttgcgttgtgttcacacattgagtgctactatgtacaagaccatgtgtcagacactgaggtaacaggtatagctactagatagagttcatagctatggaggcaagcagattcactgactgctaattctaacatgatgtgacagtgcaactagaaaaacataaacaagcactatgtgagcacaaagaaggtgcacatcaactccttacaggtacctgtaaaagccaaagggtaacagttggattgcaccttgaagaggatgcacttttttttttttttaagacagaatctcactctgttgcccaggctggagtgcagtggggcaatctgggctcacttcaacctctacctcccgagttcaagcaattctcctgcctcagcctcctgagtagctggtactagaggcatgcgccatgatgctgggctaatttttgtattttcggtagacgtgaagtttcaccaagttggccaggctggtcttgaactcctgacctcaaatcatccacccacctcagcctcccaaaatgctgagactacaggcgtgagccaccgcgcctgacctggatgtaagattttgataggtacagaacaaggaaaagactttccaggccgggcacagtggcttatgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcagcagttcaagaccagcgtggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcatggtggtgggtccctgtaatcccagctactccggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagcaaagaccgcgccactgcactccagcctgggtgacagagggagactccgtctcaaaaaaaaaaaaaaaagactttccagaaggagcagcataaacacaggcatgacatgtttccataatggcaagtggccctaaatgactagaatataaggtagatccagtaggaaaggacttagaaggggctttggaaggtgagtctggaaattaaaactggggtaaacgtgatggaccctgaacatcattatactgcttaagatgctaatcttaatcctgaaggtaatgggaaaacctcctaaggtttatgttattttctttctacttaggctatttaaaaagtggagtgacggccaggcgcagtgactcatgcctgtaatcccagcactttgggaggccgaggtgggcggatcaccaggagttcgagaccagcctgaccaacatggtgaaaccccgcctctactgaaaatacaaaaattagccaggtgtggtggtgggcgcctgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacccgggaagtggaggttgcagtgagcagagatcgtgccattgtactccagcctgggcaacaagagcgaaactcagtcacaaaaaaaaaaaaaaaaaaaaaggagtgacatgcttagatctctgttttggaatgacaggttttttgtttctagcatcaatccaaggttcatggcttgagaaggtgtactgccagcaatgccattaaccagcaaagggaatgcaggaagaggaacagatctggtgggcatcagtttggatgctctgagtttgagctgcctgtgaaaactgcaggtggtgatatgcaattaacattcacatacggagttcaaaactagagacacaaatttgagagtcatcacagaaatgtgaagtgtgttttctataactaaagataaccatgctaacatagccatgtgttacattagcattttttttttttttgagacggagtctcactctgttgcccaggctgaagtgcagtgcacaatcttggctcactgcaacctccacctcctgggttcaagcgattctcctgccttagtctcctgagtagctggaattacaggcacctaccaacacgcttggctaatttttgcattttagtagagatggggctttaccatgttggccagctggtctcaaactcctgacctcaagtgattcacccaccttggccccccaaagtgctgggattacaggtgtgagccactgtgcccggccttacattttgtgttttttcctgctgcttgtatgtgtgcaagtctgtgtatcatcaatgggtatatgtgtacctgcgctgacaacaaaaaatgagatgcatatcagctactacacaaagctgttataaggatgaaatgcagttagccagtgctcagtaaagggcagttgctttactactactaggtggggtggtgtatgtgagaatctgtatactgccattagtaggctttagtatgtagtgtgcatatggaattcatgcattagtgtgtagtatgtgtgggacccactcacctgagcagcttctctccccacttacagtggcatctgttgaggattcctgtgagggataaggcagggagtgaacttgttacaaggcagggacagggaatggaatgtgtttatgtgtctaagctgaggcatccaggtcagaggtgctggttgttgaggaagctggcctgggagggcacaaaggcagccaaagctggtgcctggccacaaatatgagctgggattaccgtacatggagatgggggaagggatggacactcacagggacacttagccagaaaaatacacaaagcagacctagttaaa<font color=red>  [Part of this file has been deleted for brevity]</font>accccctaaataaaacttctcctctaccccaacccaaccctgtttctagggctaatcttgaaaccagtttaccaccactcctaacactaaacttaaatctgactctaaatgtaagtccaatctgagccacaagcctaaagttgaactttatcctgctttatgaattattcatccattcctccatttagtgagtatctgcgtgcctaacacatgctgggcattgtcctaaggcaggagggacatggaggcaaagggatcagagaaggtaccagcacctgtggagcttgtattccagtgaggccagacggaaaagaaagaaactgaagaagaaattggtactatgagaaaataagacaggctgatgttgtaagagtggcagggagctacttttaaatacagtagtcagcaaaatcctctttgagtgtttgggtggcactggagctgagacccaaatgacaaaaaatagtgaccaggtaaaagtttgggagcaaagcatttcaggtaaagggagcagctactgcaaaggctggaaggcggaaccaagctgggggtgttgacgacaaacagaaggccagtgtggctggagcagagagagagactgggaggcgggtgggagatgaggtcagagaggagggcaggggccaggtcatgcagggccatgcaagaagggtaaagcctctagatttcatccagccacaggaagcctttaaaggtcgtcagagtgtgtggtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgttgcaggggagagagggggagggagagagagagagagagagagaagagggaggtgagcagaggtgattggatttttttttcttttgacatggtgtcttgctctgtggcctaggctggagtgcagtggcaccatcatagcccactgcaacctcaaaaccatgggctcaagtcatccttccacctcagcttcccaagtatctaggactacaggtgtgtgccactgtgcctggctaattttaaaaaatattttaaaatttttgttgagacagggtctatgctgctcaggctggtctcgaactcctggtttcaagtgatctgcccatcttggcctcccaaagtttttttttgttagtttgagaggcggtttcgctcgttgcccaggctggagtgcaatgactgatctcatctcactgcaacctctgcctcctgggttcaagcgattctcctgcttcagcctcccaagtagctgggattacaggtgcatgccaccattcccggctaattttttgtatttagtagagatggggtttcaccatgttagtcaggctgatctcaaactcctgacctcaggtgatccgcctgcctcagcctcccaaagttttgggattacaggtgtgagccaccatgctgggccagcctcccaaagttttgggattacaggcatgagtcaccacactggccctggattttttttctttcttttttttggagacggagtctcactctgttgcccaggctggagtgcaatggcgtaatctcagctcactgcaacctctgctgcccgggttcaaacgattctcctgtcttagcctcctgagtagctgggattataggtgcatgccaccatgcctggctaatttttgtacttttagtagagaaagtacaccatcttggccaggctggtctcgaactcctgacctcaggtgatccacttgcgtcggcctcccaaagtgctgggattacaggcgtgagacaccgcacccagcctttttttttttttttcttttaagacagaatcgctctgtcacccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccaggtttaagcaatccacctatgtcagtctcccaagtagctgggattataggtgcatgtcaccatgcctggctaatttttgtacttttagtatagaaagtacaccatgttggccaggctggtcttgaactcctgacctcaagtgatccgcctgcctcagcctcccgaagtgctggaattacagacatgtgccactgcacccggcctggttttttttttctaagagatggagtctcacttttctgcccaggttggagtgcaatggcaccatcatagctcactgcagccttcaactcttggcctcaggcaatccttgcaccttagcctcgcagtgttgggattacaggcatgagccactgagccttgcctggacttttttttttttttgagatggcgtctcgctctgttgcccaggttggagtgctacggcatgatcttggctcactgcaacttccacctcccaggttcaagcgattctcttgcctcggccccccgagtagctgggattacaggcatgcgccaccgtgcctggctaattttggtatttttagtagagatagggtttcatcatgttgggcaggctggtcttgaactcctgacctcgtgatccacccacctcggcctcccaaagtgctgggattataggcatagccaacgcgcccagcctggacttgtttttaaaagatcactgtggctcctgtgtttaggctggctggtaggagacaggtggcagtggcattgatggtgaagagaaaatagtggcagccatggagatggagagaagtagacaagtttgggatatattatacattccaggggtagaaacaacaggactagatgatggattgatgggtgggagatgtagatactgggagagaagcaggattctgatggatggaaaaactaaaaaattctattttgggtgtggtaagtctaagtctattagacatgcaagtagagatgtcactgggcagatacacatctggatttcaggggcaaggtccaagctagagaaagaaacctgggcatggtcagcatgaggatggtgtttaaagccatggaacttatcttgtgcatccctataagacccctttgaggcacttgtttcccctcacaatggatgcagtgcatcttccattctgaattccagaggcaacaacctcctgctcctagaagctaaactctccagacttagtcttctgaattc</pre></td></tr></table><p>
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