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📄 emma.usage

📁 emboss的linux版本的源代码
💻 USAGE
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<b>Here is a sample session with emma</b><p><p><table width="90%"><tr><td bgcolor="#CCFFFF"><pre>% <b>emma </b>Multiple alignment program - interface to ClustalW programInput (gapped) sequence(s): <b>globins.fasta</b>output sequence set [hbb_human.aln]: <b></b>Dendrogram (tree file) from clustalw output file [hbb_human.dnd]: <b></b> CLUSTAL W (1.83) Multiple Sequence AlignmentsSequence type explicitly set to ProteinSequence format is PearsonSequence 1: HBB_HUMAN       146 aaSequence 2: HBB_HORSE       146 aaSequence 3: HBA_HUMAN       141 aaSequence 4: HBA_HORSE       141 aaSequence 5: MYG_PHYCA       153 aaSequence 6: GLB5_PETMA      149 aaSequence 7: LGB2_LUPLU      153 aaStart of Pairwise alignmentsAligning...Sequences (1:2) Aligned. Score:  83Sequences (1:3) Aligned. Score:  43Sequences (1:4) Aligned. Score:  42Sequences (1:5) Aligned. Score:  24Sequences (1:6) Aligned. Score:  21Sequences (1:7) Aligned. Score:  14Sequences (2:3) Aligned. Score:  41Sequences (2:4) Aligned. Score:  43Sequences (2:5) Aligned. Score:  24Sequences (2:6) Aligned. Score:  19Sequences (2:7) Aligned. Score:  15Sequences (3:4) Aligned. Score:  87Sequences (3:5) Aligned. Score:  26Sequences (3:6) Aligned. Score:  29Sequences (3:7) Aligned. Score:  16Sequences (4:5) Aligned. Score:  26Sequences (4:6) Aligned. Score:  27Sequences (4:7) Aligned. Score:  12Sequences (5:6) Aligned. Score:  21Sequences (5:7) Aligned. Score:  7Sequences (6:7) Aligned. Score:  11Guide tree        file created:   [12345678A]Start of Multiple AlignmentThere are 6 groupsAligning...Group 1: Sequences:   2      Score:2194Group 2: Sequences:   2      Score:2165Group 3: Sequences:   4      Score:960Group 4:                     DelayedGroup 5:                     DelayedGroup 6:                     DelayedSequence:5     Score:865Sequence:6     Score:797Sequence:7     Score:1044Alignment Score 4164GCG-Alignment file created      [12345678A]</pre></td></tr></table><p><p><a href="#input.1">Go to the input files for this example</a><br><a href="#output.1">Go to the output files for this example</a><p><p>

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