showalign.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: globins.showalign</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
                   10        20        30        40        50        60
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx
HBB_HUMAN  --------VH.tPE.K.A.TaL.G.V.-VD....E..GR-.LVvY.WT.R..Es.GD..T
HBB_HORSE  --------VQ..GE.KaA.LaL.D.V.-EE....E..GR-.LVvY.WT.R..Ds.GD..N
HBA_HUMAN  --------------VL.PADKTNV.AA-WGk..AH.GEYGAEAlERMFLS.PT.KTYFPH
HBA_HORSE  --------------VL.AADKTNV.AA-WSk...H.GEYGAEAlERMFLG.PT.KTYFPH
MYG_PHYCA  -------VLSEGEWqLVLHVWAKVeAd-VAGH.QDI.IR-.FKSH.ETLEK.DR.KH.KT
GLB5_PETMA PIVDTGSVAP..AA.KtKiR.A.APVYSTY.TS.VDiLVKFFTST.AA.E..PK.KG.tT
LGB2_LUPLU --------GA.tESqAaL.K.S.EeF.ANIPKHTHRFFILvLE.A.AAkDL.SFLKGT.E
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx

                   70        80        90       100       110       120
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH
HBB_HUMAN  P.AvM.nPk..A......G.FS.GlA...n.kGTF.T..e..CD..H--...E..r..Gn
HBB_HORSE  PGAvM.nPk..A......HsFGeG.H...n.kGTF.A..e..CD..H--...E..r..Gn
HBA_HUMAN  F.LSH..A...G.....AD..TnA.A.v..mPNALsA......H...--...V.....S.
HBA_HORSE  F.LSH..A...A.....GD..TLA.G.....PGALsN......H...--...V.....S.
MYG_PHYCA  EAE.KA.EDl.K..VT..T..GAIlKKKGHH.AELKP.aQS..T.Hk--iPIKYLeFiSE
GLB5_PETMA A.QlKK.AD.rW.AeriiN.vN.A.ASm..T.KMSMK.R..SGKHAk--SFQVdPqYFKV
LGB2_LUPLU VPQNNPEL.AHAGKVFK.VYEAAIQLQvTGvVVTD.T.Kn.GsVHvSKG.ADAh.PvvKE
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH

                  130       140       150       160       170       180
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx
HBB_HUMAN  V.vC...H.FGKe...P.Q.aYQ.Vv.G..NA.AH..H------
HBB_HORSE  V.vV...R.FGK.....lQ..YQ.Vv.G..NA.AH..H------
HBA_HUMAN  C..VT..A.LPAe...A.H..lD.F..S.sTV.TS..R------
HBA_HORSE  C..ST..V.LPN....A.H..lD.F.sS.sTV.TS..R------
MYG_PHYCA  AiiH..HSRHPG..GAdAQGa.N.A.ELFRKDiAA..KELGYQG
GLB5_PETMA LAAViADTVAAG.AGF.KLM..ICI.LRS.Y-------------
LGB2_LUPLU Ai.KTiKEVVGAKwsE.lNsaWTIAYDEl.IViKKeMNDAA---
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx

</pre>
</td></tr></table><p>

<a name="output.2"></a>
<h3>Output files for usage example 2</h3>
<p><h3>File: globins.showalign</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
                   10        20        30        40        50        60
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx
HBB_HUMAN  --------VH.tPE.K.A.TaL.G.V.-VD....E..GR-.LVvY.WT.R..Es.GD..T
HBB_HORSE  --------VQ..GE.KaA.LaL.D.V.-EE....E..GR-.LVvY.WT.R..Ds.GD..N
HBA_HORSE  --------------VL.AADKTNV.AA-WSk...H.GEYGAEAlERMFLG.PT.KTYFPH
HBA_HUMAN  --------------VL.PADKTNV.AA-WGk..AH.GEYGAEAlERMFLS.PT.KTYFPH
GLB5_PETMA PIVDTGSVAP..AA.KtKiR.A.APVYSTY.TS.VDiLVKFFTST.AA.E..PK.KG.tT
MYG_PHYCA  -------VLSEGEWqLVLHVWAKVeAd-VAGH.QDI.IR-.FKSH.ETLEK.DR.KH.KT
LGB2_LUPLU --------GA.tESqAaL.K.S.EeF.ANIPKHTHRFFILvLE.A.AAkDL.SFLKGT.E
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx

                   70        80        90       100       110       120
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH
HBB_HUMAN  P.AvM.nPk..A......G.FS.GlA...n.kGTF.T..e..CD..H--...E..r..Gn
HBB_HORSE  PGAvM.nPk..A......HsFGeG.H...n.kGTF.A..e..CD..H--...E..r..Gn
HBA_HORSE  F.LSH..A...A.....GD..TLA.G.....PGALsN......H...--...V.....S.
HBA_HUMAN  F.LSH..A...G.....AD..TnA.A.v..mPNALsA......H...--...V.....S.
GLB5_PETMA A.QlKK.AD.rW.AeriiN.vN.A.ASm..T.KMSMK.R..SGKHAk--SFQVdPqYFKV
MYG_PHYCA  EAE.KA.EDl.K..VT..T..GAIlKKKGHH.AELKP.aQS..T.Hk--iPIKYLeFiSE
LGB2_LUPLU VPQNNPEL.AHAGKVFK.VYEAAIQLQvTGvVVTD.T.Kn.GsVHvSKG.ADAh.PvvKE
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH

                  130       140       150       160       170       180
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx
HBB_HUMAN  V.vC...H.FGKe...P.Q.aYQ.Vv.G..NA.AH..H------
HBB_HORSE  V.vV...R.FGK.....lQ..YQ.Vv.G..NA.AH..H------
HBA_HORSE  C..ST..V.LPN....A.H..lD.F.sS.sTV.TS..R------
HBA_HUMAN  C..VT..A.LPAe...A.H..lD.F..S.sTV.TS..R------
GLB5_PETMA LAAViADTVAAG.AGF.KLM..ICI.LRS.Y-------------
MYG_PHYCA  AiiH..HSRHPG..GAdAQGa.N.A.ELFRKDiAA..KELGYQG
LGB2_LUPLU Ai.KTiKEVVGAKwsE.lNsaWTIAYDEl.IViKKeMNDAA---
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx

</pre>
</td></tr></table><p>

<a name="output.3"></a>
<h3>Output files for usage example 3</h3>
<p><h3>File: globins.showalign</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
&lt;pre&gt;
                   10        20        30        40        50        60
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xxx&lt;font color=green&gt;xxxxxxxLSx&lt;/font&gt;xExSxVxSxWxKxNxxxEVGGxALxxxLx&lt;font color=red&gt;x&lt;/font&gt;IxPxxQx&lt;font color=blue&gt;FFxTFx&lt;/font&gt;xLSx
HBB_HUMAN  ---&lt;font color=green&gt;-----VH.tP&lt;/font&gt;E.K.A.TaL.G.V.-VD....E..GR-.L&lt;font color=red&gt;V&lt;/font&gt;vY.WT.R&lt;font color=blue&gt;..Es.G&lt;/font&gt;D..T
HBB_HORSE  ---&lt;font color=green&gt;-----VQ..G&lt;/font&gt;E.KaA.LaL.D.V.-EE....E..GR-.L&lt;font color=red&gt;V&lt;/font&gt;vY.WT.R&lt;font color=blue&gt;..Ds.G&lt;/font&gt;D..N
HBA_HUMAN  ---&lt;font color=green&gt;----------&lt;/font&gt;-VL.PADKTNV.AA-WGk..AH.GEYGAE&lt;font color=red&gt;A&lt;/font&gt;lERMFLS&lt;font color=blue&gt;.PT.KT&lt;/font&gt;YFPH
HBA_HORSE  ---&lt;font color=green&gt;----------&lt;/font&gt;-VL.AADKTNV.AA-WSk...H.GEYGAE&lt;font color=red&gt;A&lt;/font&gt;lERMFLG&lt;font color=blue&gt;.PT.KT&lt;/font&gt;YFPH
MYG_PHYCA  ---&lt;font color=green&gt;----VLSEGE&lt;/font&gt;WqLVLHVWAKVeAd-VAGH.QDI.IR-.F&lt;font color=red&gt;K&lt;/font&gt;SH.ETLE&lt;font color=blue&gt;K.DR.K&lt;/font&gt;H.KT
GLB5_PETMA PIV&lt;font color=green&gt;DTGSVAP..A&lt;/font&gt;A.KtKiR.A.APVYSTY.TS.VDiLVKFF&lt;font color=red&gt;T&lt;/font&gt;ST.AA.E&lt;font color=blue&gt;..PK.K&lt;/font&gt;G.tT
LGB2_LUPLU ---&lt;font color=green&gt;-----GA.tE&lt;/font&gt;SqAaL.K.S.EeF.ANIPKHTHRFFILvL&lt;font color=red&gt;E&lt;/font&gt;.A.AAkD&lt;font color=blue&gt;L.SFLK&lt;/font&gt;GT.E
Consensus  xxx&lt;font color=green&gt;xxxxxxxLSx&lt;/font&gt;xExSxVxSxWxKxNxxxEVGGxALxxxLx&lt;font color=red&gt;x&lt;/font&gt;IxPxxQx&lt;font color=blue&gt;FFxTFx&lt;/font&gt;xLSx

                   70        80        90       100       110       120
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH
HBB_HUMAN  P.AvM.nPk..A......G.FS.GlA...n.kGTF.T..e..CD..H--...E..r..Gn
HBB_HORSE  PGAvM.nPk..A......HsFGeG.H...n.kGTF.A..e..CD..H--...E..r..Gn
HBA_HUMAN  F.LSH..A...G.....AD..TnA.A.v..mPNALsA......H...--...V.....S.
HBA_HORSE  F.LSH..A...A.....GD..TLA.G.....PGALsN......H...--...V.....S.
MYG_PHYCA  EAE.KA.EDl.K..VT..T..GAIlKKKGHH.AELKP.aQS..T.Hk--iPIKYLeFiSE
GLB5_PETMA A.QlKK.AD.rW.AeriiN.vN.A.ASm..T.KMSMK.R..SGKHAk--SFQVdPqYFKV
LGB2_LUPLU VPQNNPEL.AHAGKVFK.VYEAAIQLQvTGvVVTD.T.Kn.GsVHvSKG.ADAh.PvvKE
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH

                  130       140       150       160       170       180
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx
HBB_HUMAN  V.vC...H.FGKe...P.Q.aYQ.Vv.G..NA.AH..H------
HBB_HORSE  V.vV...R.FGK.....lQ..YQ.Vv.G..NA.AH..H------
HBA_HUMAN  C..VT..A.LPAe...A.H..lD.F..S.sTV.TS..R------
HBA_HORSE  C..ST..V.LPN....A.H..lD.F.sS.sTV.TS..R------
MYG_PHYCA  AiiH..HSRHPG..GAdAQGa.N.A.ELFRKDiAA..KELGYQG
GLB5_PETMA LAAViADTVAAG.AGF.KLM..ICI.LRS.Y-------------
LGB2_LUPLU Ai.KTiKEVVGAKwsE.lNsaWTIAYDEl.IViKKeMNDAA---
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx

&lt;/pre&gt;
</pre>
</td></tr></table><p>

<a name="output.4"></a>
<h3>Output files for usage example 4</h3>
<p><h3>File: globins.showalign</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
HBB_HUMAN  HLTPEEKSAVTALWGKVN-VD
HBB_HORSE  Q.sG...a..L...D...-Ee
HBA_HUMAN  -----VL.PADKTNV.AA-WG
HBA_HORSE  -----VL..ADKTNV.AA-WS
MYG_PHYCA  SEGEWqLVLHVWAKVeAd-.A
GLB5_PETMA P.sAA..tKiRsA.AP.YSTY
LGB2_LUPLU A..ESqAaL.KsS.EeF.ANI

</pre>
</td></tr></table><p>

<a name="output.6"></a>
<h3>Output files for usage example 6</h3>
<p><h3>File: globins.showalign</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
                   10        20        30        40        50        60
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx
HBB_HUMAN  --------vhLTpeEkSaVtAlWgKvN-vdEVGGeALgr-LlvVyPwtQrFFeSFgdLSt
HBB_HORSE  --------vqLSgeEkAaVlAlWdKvN-eeEVGGeALgr-LlvVyPwtQrFFdSFgdLSn
HBA_HUMAN  --------------vlSpadktnvKaa-wgKVGahAgeygaeaLermflsFptTktyfph
HBA_HORSE  --------------vlSaadktnvKaa-wsKVGGhAgeygaeaLermflgFptTktyfph
MYG_PHYCA  -------vlsegewQlvlhvwakvEaD-vaghGqdiLir-LfkshPetlekFdrFkhLkt
GLB5_PETMA pivdtgsvapLSaaEkTkIrSaWapvystyEtsGvdIlvkfftstPaaQeFFpkFkgLTt
LGB2_LUPLU --------gaLTesQaAlVkSsWeEfNanipkhthrffilVleIaPaaKdlFsflkgtSe
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx

                   70        80        90       100       110       120
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH
HBB_HUMAN  pDaVmGNpKVKaHGKKVLgAfsDgLaHLDNLKgtfAtLSELHcdKLh--VDPeNFRLLgN
HBB_HORSE  pgaVmGNpKVKaHGKKVLhSfgEgVhHLDNLKgtfAaLSELHcdKLh--VDPeNFRLLgN
HBA_HUMAN  fDlshGSaQVKgHGKKVadALtNaVaHVDDMpnalSaLSDLHAhKLR--VDPvNFKLLsH
HBA_HORSE  fDlshGSaQVKaHGKKVgdALtlaVgHLDDLpgalSnLSDLHAhKLR--VDPvNFKLLsH
MYG_PHYCA  eaeMkaSedLKkHGvtVLtALgaiLkkkghhEaelkpLAqsHAtKhK--IpikylEfIse
GLB5_PETMA aDqLkkSadVRwHaERIInAVnDaVasMDDtEkmsmkLrDLsgkhaK--sfqvDpQyfkv
LGB2_LUPLU vpqnnpelQahagkvfkLvyeaaiqlqVtgVvvtdAtLkNLgSvhVskgVadaHFpVVke
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH

                  130       140       150       160       170       180
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx
HBB_HUMAN  vLVcVLAhHfgkEFTPpVqAAyqKvVAgVAnaLahKYh------
HBB_HORSE  vLVvVLArHfgkDFTPELqASyqKvVAgVAnaLahKYh------
HBA_HUMAN  cLLvtLAaHlpaEFTPaVhASLdKfLAsVStvLtsKYr------
HBA_HORSE  cLLstLAvHlpnDFTPaVhASLdKfLSsVStvLtsKYr------
MYG_PHYCA  aIIhVLhsrhpgDFgaDaqgAMnKaLelfrkdIaaKYkelgyqg
GLB5_PETMA laavIadtvaagDagfEklmSMiciLlrsAy-------------
LGB2_LUPLU aILktIkevvgakWSeELnSAwtiaydeLAivIkkEmndaa---
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx

</pre>
</td></tr></table><p>

<a name="output.7"></a>
<h3>Output files for usage example 7</h3>
<p><h3>File: globins.showalign</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
                   10        20        30        40        50        60
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx
HBB_HUMAN  --------..L...E.S.V...W.K.N-..EVGG.AL..-L....P..Q.FF..F..LS.
HBB_HORSE  --------..LS..E...V...W.K.N-..EVGG.AL..-L....P..Q.FF..F..LS.
HBA_HUMAN  --------------..S.......K..-...VG..A..............F..T......
HBA_HORSE  --------------..S.......K..-...VGG.A..............F..T......
MYG_PHYCA  -------....................-....G...L..-L....P.....F..F..L..
GLB5_PETMA ..........LS..E.....S.W.......E..G...........P..Q.FF..F..L..
LGB2_LUPLU --------..L.......V.S.W...N................I.P.....F......S.
Consensus  xxxxxxxxxxLSxxExSxVxSxWxKxNxxxEVGGxALxxxLxxIxPxxQxFFxTFxxLSx

                   70        80        90       100       110       120
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH
HBB_HUMAN  .D...G...VK.HGKKVL.A..D...HLD.L....A.LS.LH..KL.--VDP.NF.LL..
HBB_HORSE  .....G...VK.HGKKVL......V.HLD.L....A.LS.LH..KL.--VDP.NF.LL..
HBA_HUMAN  .D...GS.QVK.HGKKV..AL...V.H.DD.......LSDLHA.KLR--VDP.NFKLL.H
HBA_HORSE  .D...GS.QVK.HGKKV..AL...V.HLDDL......LSDLHA.KLR--VDP.NFKLL.H
MYG_PHYCA  ...M..S...K.HG..VL.AL..........E.....L...HA.K..--...........
GLB5_PETMA .D....S..V..H......A..D.V...DD.E.....L.DL......--...........
LGB2_LUPLU ........Q........L.................A.L..L........V....F.....
Consensus  xDxMxGSxQVKxHGKKVLxALxDxVxHLDDLExxxAxLSDLHAxKLRxxVDPxNFKLLxH

                  130       140       150       160       170       180
           ----:----|----:----|----:----|----:----|----:----|----:----|
Consensus  xLLxVLAxHxxxDFTPEVxASMxKxLAxVAxxLxxKYxx-xxxx
HBB_HUMAN  .L..VLA.H....FTP.V.A...K..A.VA..L..KY.------