sigcleave.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: ach2_drome.sig</h3>
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<pre>
########################################
# Program: sigcleave
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: sigcleave
#    -sequence tsw:ach2_drome
# Report_format: motif
# Report_file: ach2_drome.sig
########################################

#=======================================
#
# Sequence: ACH2_DROME     from: 1   to: 576
# HitCount: 9
#
# Reporting scores over 3.50
#
#=======================================

(1) Score 13.739 length 13 at residues 29-&gt;41
 Sequence: LLVLLLLCETVQA
           |           |
          29           41
 mature_peptide: NPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQIL

(2) Score 12.135 length 13 at residues 26-&gt;38
 Sequence: LCLLLVLLLLCET
           |           |
          26           38
 mature_peptide: VQANPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKD

(3) Score 10.465 length 13 at residues 28-&gt;40
 Sequence: LLLVLLLLCETVQ
           |           |
          28           40
 mature_peptide: ANPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQI

(4) Score 7.360 length 13 at residues 528-&gt;540
 Sequence: FLWLFMIASLVGT
           |           |
         528           540
 mature_peptide: FVILGEAPSLYDDTKAIDVQLSDVAKQIYNLTEKKN

(5) Score 6.981 length 13 at residues 330-&gt;342
 Sequence: FTMLLVGLSVVIT
           |           |
         330           342
 mature_peptide: IIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLMRVPKDLLRDLAANKIN

(6) Score 5.057 length 13 at residues 24-&gt;36
 Sequence: KPLCLLLVLLLLC
           |           |
          24           36
 mature_peptide: ETVQANPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNL

(7) Score 4.026 length 13 at residues 31-&gt;43
 Sequence: VLLLLCETVQANP
           |           |
          31           43
 mature_peptide: DAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTT

(8) Score 3.751 length 13 at residues 527-&gt;539
 Sequence: LFLWLFMIASLVG
           |           |
         527           539
 mature_peptide: TFVILGEAPSLYDDTKAIDVQLSDVAKQIYNLTEKKN

(9) Score 3.632 length 13 at residues 308-&gt;320
 Sequence: LLISEIIPSTSLA
           |           |
         308           320
 mature_peptide: LPLLGKYLLFTMLLVGLSVVITIIILNIHYRKPSTHKMRPWIRSFFIKRL


#---------------------------------------
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 9
#---------------------------------------
</pre>
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