showfeat.usage

emboss的linux版本的源代码

<b>Here is a sample session with showfeat</b>
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% <b>showfeat </b>
Show features of a sequence.
Input sequence(s): <b>tembl:hsfau1</b>
Output file [hsfau1.showfeat]: <b></b>

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<a href="#input.1">Go to the input files for this example</a><br><a href="#output.1">Go to the output files for this example</a><p><p>
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<b>Example 2</b>
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Display 'joined' features on one line with positions: 
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% <b>showfeat -sort join -pos </b>
Show features of a sequence.
Input sequence(s): <b>tembl:hsfau1</b>
Output file [hsfau1.showfeat]: <b></b>

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<p>
<a href="#output.2">Go to the output files for this example</a><p><p>
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<b>Example 3</b>
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Display just positions and names of CDS features - this can be used as a regions file in showseq: 
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% <b>showfeat -matchtype CDS -width 0 -noid -nodesc -noscale -pos  </b>
Show features of a sequence.
Input sequence(s): <b>tembl:hsfau1</b>
Output file [hsfau1.showfeat]: <b></b>

</pre></td></tr></table><p>
<p>
<a href="#output.3">Go to the output files for this example</a><p><p>