antigenic.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: act1_fugru.antigenic</h3>
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<pre>
########################################
# Program: antigenic
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: antigenic
#    -sequence tsw:act1_fugru
# Report_format: motif
# Report_file: act1_fugru.antigenic
########################################

#=======================================
#
# Sequence: ACT1_FUGRU     from: 1   to: 375
# HitCount: 18
#=======================================

Max_score_pos at "*"

(1) Score 1.207 length 9 at residues 214-&gt;222
               *
 Sequence: EKLCYVALD
           |       |
         214       222

(2) Score 1.187 length 15 at residues 131-&gt;145
                 *
 Sequence: AMYVAIQAVLSLYAS
           |             |
         131             145

(3) Score 1.166 length 8 at residues 5-&gt;12
              *
 Sequence: IAALVVDN
           |      |
           5      12

(4) Score 1.164 length 12 at residues 27-&gt;38
                *
 Sequence: PRAVFPSIVGRP
           |          |
          27          38

(5) Score 1.136 length 24 at residues 160-&gt;183
                        *
 Sequence: THTVPIYEGYALPHAILRLDLAGR
           |                      |
         160                      183

(6) Score 1.135 length 6 at residues 367-&gt;372
                *
 Sequence: PSIVHR


<font color=red>  [Part of this file has been deleted for brevity]</font>

(11) Score 1.102 length 15 at residues 62-&gt;76
                 *
 Sequence: RGILTLKYPIEHGIV
           |             |
          62             76

(12) Score 1.086 length 19 at residues 232-&gt;250
                        *
 Sequence: SSSSLEKSYELPDGQVITI
           |                 |
         232                 250

(13) Score 1.083 length 6 at residues 327-&gt;332
              *
 Sequence: IKIIAP
           |    |
         327    332

(14) Score 1.074 length 7 at residues 317-&gt;323
              *
 Sequence: ITALAPS
           |     |
         317     323

(15) Score 1.068 length 7 at residues 186-&gt;192
                *
 Sequence: TDYLMKI
           |     |
         186     192

(16) Score 1.066 length 7 at residues 40-&gt;46
              *
 Sequence: HQGVMVG
           |     |
          40     46

(17) Score 1.045 length 7 at residues 269-&gt;275
           *
 Sequence: MESCGIH
           |     |
         269     275

(18) Score 1.034 length 7 at residues 51-&gt;57
            *
 Sequence: DSYVGDE
           |     |
          51     57


#---------------------------------------
#---------------------------------------
</pre>
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<a name="output.2"></a>
<h3>Output files for usage example 2</h3>
<p><h3>File: act1_fugru.antigenic</h3>
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<pre>
##gff-version 2.0
##date 2006-07-15
##Type Protein ACT1_FUGRU
ACT1_FUGRU	antigenic	region	214	222	1.207	+	.	Sequence "ACT1_FUGRU.1" ; note "*pos 218"
ACT1_FUGRU	antigenic	region	131	145	1.187	+	.	Sequence "ACT1_FUGRU.2" ; note "*pos 137"
ACT1_FUGRU	antigenic	region	5	12	1.166	+	.	Sequence "ACT1_FUGRU.3" ; note "*pos 8"
ACT1_FUGRU	antigenic	region	27	38	1.164	+	.	Sequence "ACT1_FUGRU.4" ; note "*pos 32"
ACT1_FUGRU	antigenic	region	160	183	1.136	+	.	Sequence "ACT1_FUGRU.5" ; note "*pos 173"
ACT1_FUGRU	antigenic	region	367	372	1.135	+	.	Sequence "ACT1_FUGRU.6" ; note "*pos 372"
ACT1_FUGRU	antigenic	region	93	108	1.116	+	.	Sequence "ACT1_FUGRU.7" ; note "*pos 103"
ACT1_FUGRU	antigenic	region	295	301	1.113	+	.	Sequence "ACT1_FUGRU.8" ; note "*pos 296"
ACT1_FUGRU	antigenic	region	256	266	1.110	+	.	Sequence "ACT1_FUGRU.9" ; note "*pos 264"
ACT1_FUGRU	antigenic	region	336	352	1.107	+	.	Sequence "ACT1_FUGRU.10" ; note "*pos 347"
ACT1_FUGRU	antigenic	region	62	76	1.102	+	.	Sequence "ACT1_FUGRU.11" ; note "*pos 68"
ACT1_FUGRU	antigenic	region	232	250	1.086	+	.	Sequence "ACT1_FUGRU.12" ; note "*pos 245"
ACT1_FUGRU	antigenic	region	327	332	1.083	+	.	Sequence "ACT1_FUGRU.13" ; note "*pos 330"
ACT1_FUGRU	antigenic	region	317	323	1.074	+	.	Sequence "ACT1_FUGRU.14" ; note "*pos 320"
ACT1_FUGRU	antigenic	region	186	192	1.068	+	.	Sequence "ACT1_FUGRU.15" ; note "*pos 191"
ACT1_FUGRU	antigenic	region	40	46	1.066	+	.	Sequence "ACT1_FUGRU.16" ; note "*pos 43"
ACT1_FUGRU	antigenic	region	269	275	1.045	+	.	Sequence "ACT1_FUGRU.17" ; note "*pos 269"
ACT1_FUGRU	antigenic	region	51	57	1.034	+	.	Sequence "ACT1_FUGRU.18" ; note "*pos 52"
</pre>
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