pscan.input

emboss的linux版本的源代码

<a name="input.1"></a>
<h3>Input files for usage example </h3>

'tsw:opsd_human' is a sequence entry in the example protein database 'tsw'
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<p><h3>Database entry: tsw:opsd_human</h3>
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ID   OPSD_HUMAN     STANDARD;      PRT;   348 AA.
AC   P08100; Q16414;
DT   01-AUG-1988 (Rel. 08, Created)
DT   01-AUG-1988 (Rel. 08, Last sequence update)
DT   15-JUL-1999 (Rel. 38, Last annotation update)
DE   RHODOPSIN.
GN   RHO.
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
OC   Eutheria; Primates; Catarrhini; Hominidae; Homo.
RN   [1]
RP   SEQUENCE FROM N.A.
RX   MEDLINE; 84272729.
RA   NATHANS J., HOGNESS D.S.;
RT   "Isolation and nucleotide sequence of the gene encoding human
RT   rhodopsin.";
RL   Proc. Natl. Acad. Sci. U.S.A. 81:4851-4855(1984).
RN   [2]
RP   SEQUENCE OF 1-120 FROM N.A.
RA   BENNETT J., BELLER B., SUN D., KARIKO K.;
RL   Submitted (NOV-1994) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   REVIEW ON ADRP VARIANTS.
RX   MEDLINE; 94004905.
RA   AL-MAGHTHEH M., GREGORY C., INGLEHEARN C., HARDCASTLE A.,
RA   BHATTACHARYA S.;
RT   "Rhodopsin mutations in autosomal dominant retinitis pigmentosa.";
RL   Hum. Mutat. 2:249-255(1993).
RN   [4]
RP   VARIANT ADRP HIS-23.
RX   MEDLINE; 90136922.
RA   DRYJA T.P., MCGEE T.L., REICHEI E., HAHN L.B., COWLEY G.S.,
RA   YANDELL D.W., SANDBERG M.A., BERSON E.L.;
RT   "A point mutation of the rhodopsin gene in one form of retinitis
RT   pigmentosa.";
RL   Nature 343:364-366(1990).
RN   [5]
RP   VARIANTS ADRP.
RX   MEDLINE; 91051574.
RA   FARRAR G.J., KENNA P., REDMOND R., MCWILLIAM P., BRADLEY D.G.,
RA   HUMPHRIES M.M., SHARP E.M., INGLEHEARN C.F., BASHIR R., JAY M.,
RA   WATTY A., LUDWIG M., SCHINZEL A., SAMANNS C., GAL A.,
RA   BHATTACHARYA S.S., HUMPHRIES P.;
RT   "Autosomal dominant retinitis pigmentosa: absence of the rhodopsin
RT   proline--&gt;histidine substitution (codon 23) in pedigrees from
RT   Europe.";
RL   Am. J. Hum. Genet. 47:941-945(1990).
RN   [6]
RP   VARIANTS ADRP HIS-23; ARG-58; LEU-347 AND SER-347.
RX   MEDLINE; 91015273.


<font color=red>  [Part of this file has been deleted for brevity]</font>

FT                                /FTId=VAR_004816.
FT   VARIANT     209    209       V -&gt; M (EFFECT NOT KNOWN).
FT                                /FTId=VAR_004817.
FT   VARIANT     211    211       H -&gt; P (IN ADRP).
FT                                /FTId=VAR_004818.
FT   VARIANT     211    211       H -&gt; R (IN ADRP).
FT                                /FTId=VAR_004819.
FT   VARIANT     216    216       M -&gt; K (IN ADRP).
FT                                /FTId=VAR_004820.
FT   VARIANT     220    220       F -&gt; C (IN ADRP).
FT                                /FTId=VAR_004821.
FT   VARIANT     222    222       C -&gt; R (IN ADRP).
FT                                /FTId=VAR_004822.
FT   VARIANT     255    255       MISSING (IN ADRP).
FT                                /FTId=VAR_004823.
FT   VARIANT     264    264       MISSING (IN ADRP).
FT                                /FTId=VAR_004824.
FT   VARIANT     267    267       P -&gt; L (IN ADRP).
FT                                /FTId=VAR_004825.
FT   VARIANT     267    267       P -&gt; R (IN ADRP).
FT                                /FTId=VAR_004826.
FT   VARIANT     292    292       A -&gt; E (IN CSNB4).
FT                                /FTId=VAR_004827.
FT   VARIANT     296    296       K -&gt; E (IN ADRP).
FT                                /FTId=VAR_004828.
FT   VARIANT     297    297       S -&gt; R (IN ADRP).
FT                                /FTId=VAR_004829.
FT   VARIANT     342    342       T -&gt; M (IN ADRP).
FT                                /FTId=VAR_004830.
FT   VARIANT     345    345       V -&gt; L (IN ADRP).
FT                                /FTId=VAR_004831.
FT   VARIANT     345    345       V -&gt; M (IN ADRP).
FT                                /FTId=VAR_004832.
FT   VARIANT     347    347       P -&gt; A (IN ADRP).
FT                                /FTId=VAR_004833.
FT   VARIANT     347    347       P -&gt; L (IN ADRP; COMMON VARIANT).
FT                                /FTId=VAR_004834.
FT   VARIANT     347    347       P -&gt; Q (IN ADRP).
FT                                /FTId=VAR_004835.
FT   VARIANT     347    347       P -&gt; R (IN ADRP).
FT                                /FTId=VAR_004836.
FT   VARIANT     347    347       P -&gt; S (IN ADRP).
FT                                /FTId=VAR_004837.
SQ   SEQUENCE   348 AA;  38892 MW;  07443BEA CRC32;
     MNGTEGPNFY VPFSNATGVV RSPFEYPQYY LAEPWQFSML AAYMFLLIVL GFPINFLTLY
     VTVQHKKLRT PLNYILLNLA VADLFMVLGG FTSTLYTSLH GYFVFGPTGC NLEGFFATLG
     GEIALWSLVV LAIERYVVVC KPMSNFRFGE NHAIMGVAFT WVMALACAAP PLAGWSRYIP
     EGLQCSCGID YYTLKPEVNN ESFVIYMFVV HFTIPMIIIF FCYGQLVFTV KEAAAQQQES
     ATTQKAEKEV TRMVIIMVIA FLICWVPYAS VAFYIFTHQG SNFGPIFMTI PAFFAKSAAI
     YNPVIYIMMN KQFRNCMLTT ICCGKNPLGD DEASATVSKT ETSQVAPA
//
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