fuzztran.input

emboss的linux版本的源代码

<a name="input.1"></a>
<h3>Input files for usage example </h3>

'tembl:rnops' is a sequence entry in the example nucleic acid database 'tembl'
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<p><h3>Database entry: tembl:rnops</h3>
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ID   RNOPS      standard; RNA; ROD; 1493 BP.
XX
AC   Z46957;
XX
SV   Z46957.1
XX
DT   20-DEC-1994 (Rel. 42, Created)
DT   27-AUG-1996 (Rel. 49, Last updated, Version 8)
XX
DE   R.norvegicus mRNA for rhodopsin.
XX
KW   rhodopsin.
XX
OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-1493
RA   Huber A., Sander P.H., Paulsen R.;
RT   "Phosphorylation of the InaD gene product, a photoreceptor membrane protein
RT   required for recovery of visual excitation";
RL   J. Biol. Chem. 271:11710-11717(1996).
XX
RN   [2]
RP   1-1493
RA   Huber A.;
RT   ;
RL   Submitted (20-DEC-1994) to the EMBL/GenBank/DDBJ databases.
RL   Huber A., Universitaet Karlsruhe, Zoologie I, Kornblumenstr. 13, 76128
RL   Karlsruhe, Germany
XX
DR   SWISS-PROT; P51489; OPSD_RAT.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1493
FT                   /db_xref="taxon:10116"
FT                   /organism="Rattus norvegicus"
FT                   /strain="Sprague-Dawley"
FT                   /clone="pRO4"
FT                   /dev_stage="adult"
FT                   /tissue_type="retina"
FT                   /cell_type="rod"
FT                   /clone_lib="rat retinal library"
FT   5'UTR           1..83
FT   CDS             84..1130
FT                   /citation=[1]
FT                   /db_xref="SWISS-PROT:P51489"
FT                   /function="phototransduction"
FT                   /product="rhodopsin"
FT                   /protein_id="CAA87081.1"
FT                   /translation="MNGTEGPNFYVPFSNITGVVRSPFEQPQYYLAEPWQFSMLAAYMF
FT                   LLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV
FT                   FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVM
FT                   ALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFC
FT                   YGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFTHQGS
FT                   NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTTLCCGKNPLGDDEASATASKT
FT                   ETSQVAPA"
FT   3'UTR           1128..1493
XX
SQ   Sequence 1493 BP; 309 A; 475 C; 365 G; 344 T; 0 other;
     ggagccgtag gtagctgagc tcgccaggca gccttggtct ctgtctacga acagcccgtg        60
     gggcagcctc aagggccgca gccatgaacg gcacagaggg ccccaatttt tatgtgccct       120
     tctccaacat cacgggcgtg gtgcgcagcc cctttgagca gccgcagtac tacctggcgg       180
     agccatggca gttctccatg ctggcagcct acatgttcct gctcatcgtg ctgggcttcc       240
     ccatcaactt cctcacgctc tacgtcaccg tacagcacaa gaagctgcgc acaccactca       300
     actacatcct gctcaacttg gctgtggctg acctcttcat ggtcttcgga ggattcacca       360
     ccaccctcta cacctcactg catggctact ttgtctttgg gcccacaggc tgcaaccttg       420
     agggcttctt tgccaccctt ggaggtgaaa tcggcctgtg gtccctggta gtcctggcca       480
     ttgagcgcta cgtggtggtc tgcaagccca tgagcaactt ccgctttggg gagaatcatg       540
     ccattatggg tgtggccttc acctgggtca tggcgttggc ctgtgctgct cccccactgg       600
     ttggctggtc caggtacatc cccgagggca tgcagtgttc atgtgggatt gactactata       660
     cactcaagcc tgaggtcaac aatgagtcct tcgtcatcta catgttcgtg gtccacttca       720
     ccatccccat gatcgtcatc ttcttctgct acgggcagct ggtcttcacc gtcaaggagg       780
     ccgccgccca gcaacaggag tcggctacca ctcagaaggc agagaaggaa gtcacgcgca       840
     tggtcatcat catggtcatc ttcttcctga tctgctggct tccctatgcc agtgtggcca       900
     tgtacatctt tacccaccag ggctccaact tcggccccat cttcatgacc cttcccgctt       960
     tctttgctaa gaccgcctcc atctacaacc caatcatcta catcatgatg aacaagcagt      1020
     tccggaactg catgctcacc acgctctgct gcggcaagaa tccactggga gatgatgagg      1080
     cctctgccac tgcctccaag acggagacca gccaggtggc tccagcctaa gcctggccag      1140
     agactgtggc tgactgtagg agtctcctgt ccccactcac cccagccaca gcccccacca      1200
     ggagcagcac ccgttggaat gaggtcatgc aggctccctc agtgttcttt tctttgtttt      1260
     taatgaattc atgaaagcaa aatgaggctc cccactcaac agggacagcc tgacaaagga      1320
     catccatcca ccaagacccc cagcctggag tccccaattc ccgggggcca gcgggatctg      1380
     tacccctccc ctcagcttgt gtctcaggaa catgacaagt gtcccggctt acggctaagt      1440
     gtctaggaca gaatggaaca catagtagct gattaataaa tgctacctgg atg             1493
//
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