codcmp.ihelp

emboss的linux版本的源代码

   Standard (Mandatory) qualifiers:
  [-first]             codon      First codon usage file
  [-second]            codon      Second codon usage file for comparison
  [-outfile]           outfile    [*.codcmp] Output file name

   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers:

   "-first" associated qualifiers
   -format1            string     Data format

   "-second" associated qualifiers
   -format2            string     Data format

   "-outfile" associated qualifiers
   -odirectory3        string     Output directory

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write standard output
   -filter             boolean    Read standard input, write standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages