showseq.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
Note that although we asked for the sequence display to end at position '100', it has displayed the sequence up to the end of the line - position '120'.  This is a feature of this program to make the display of things like restriction enzyme cutting sites easier.  <p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
PAAMIR
Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase
regulation

                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ggtaccgctggccgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgat
                 |===============|
                 promoter note="proposed rpoN-dependent promoter"
          |
          misc_feature note="last base of an XhoI site"

                   70        80        90        100       
          ----:----|----:----|----:----|----:----|
          ctacctggcgagcctggagcacgagcgggttcgcttcgta
              |===============|
          promoter note="proposed rpoN-dependent promoter"

</pre>
</td></tr></table><p>

<a name="output.2"></a>
<h3>Output files for usage example 2</h3>
<p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
PAAMIR
Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase
regulation

          ggtaccgctggccgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgat
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ccatggcgaccggctcgtagacgagctagtggtggtcggcccgctgcccttgacgtgcta

          ctacctggcgagcctggagcacgagcgggttcgcttcgtacggcgctgagcgacagtcac
          ----:----|----:----|----:----|----:----|----:----|----:----|
          gatggaccgctcggacctcgtgctcgcccaagcgaagcatgccgcgactcgctgtcagtg

</pre>
</td></tr></table><p>

<a name="output.3"></a>
<h3>Output files for usage example 3</h3>
<p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
          ggtaccgctggccgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgat
          ctacctggcgagcctggagcacgagcgggttcgcttcgta

</pre>
</td></tr></table><p>

<a name="output.4"></a>
<h3>Output files for usage example 4</h3>
<p><h3>File: rs24_fugru.showseq</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
RS24_FUGRU
40S RIBOSOMAL PROTEIN S24.

                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          MAATVTVATALPMTAALLGALGMVVAVLHPGLATVPLTGIAGLLALMTLTTPAVVPVPGP
          esshaharhryhehsreelryleaasaeirlylharyhllrlyelyeyyhhrsaahahlh
          tnprlrlgrgsetrnguungsntllplusoysarlosruegusuastrsrroplleleye

                   70        80        90        100       110       120       
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ATGPGGGLTTGPAMVTASLATALLAGPLHALAAHGLPGLLLTSALGALGALAAMLLVAGT
          rhlhlllyhhlhleayseesylyyslryirelrilehlyyyherylrylrysreyyarlh
          grneyyysrryeatlrpruprassnuossguagsyueusssrrgsngsugsngtsslgyr

                   130       
          ----:----|--
          LLASVGASLLLA
          yylealleyyys
          ssarlyarsssp

</pre>
</td></tr></table><p>

<a name="output.5"></a>
<h3>Output files for usage example 5</h3>
<p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
PAAMIR
Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase
regulation
        1 ggtaccgctggccgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgat 60
       61 ctacctggcgagcctggagcacgagcgggttcgcttcgta 100

</pre>
</td></tr></table><p>

<a name="output.6"></a>
<h3>Output files for usage example 6</h3>
<p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
PAAMIR
Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase
regulation
      123 ggtaccgctggccgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgat 182
      183 ctacctggcgagcctggagcacgagcgggttcgcttcgta 222

</pre>
</td></tr></table><p>

<a name="output.7"></a>
<h3>Output files for usage example 7</h3>
<p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
PAAMIR
Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase
regulation
          ggtaccgctggccgagcatctgctCGATCACCACCAGCCGGGCGAcgggaactgcacgat
          ctacctggcgagcctggagcacgagcgggttcgcttcgta

</pre>
</td></tr></table><p>

<a name="output.8"></a>
<h3>Output files for usage example 8</h3>
<p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
PAAMIR
Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase
regulation

                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ggtaccgctggccgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgat

                                  R  S  P  P  A  G  R  R  V           
                 |===============|
                 promoter note="proposed rpoN-dependent promoter"
          |
          misc_feature note="last base of an XhoI site"

                   70        80        90        100       110       120       
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ctacctggcgagcctggagcacgagcgggttcgcttcgtacggcgctgagcgacagtcac

                 A  S  L                                              
              |===============|
              promoter note="proposed rpoN-dependent promoter"

</pre>
</td></tr></table><p>

<a name="output.9"></a>
<h3>Output files for usage example 9</h3>
<p><h3>File: paamir.showseq </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
PAAMIR
Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase
regulation

                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ggtaccgctggccgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgat
                      |------------|
                      binding site
                        |
                        SNP
                 |===============|
                 promoter note="proposed rpoN-dependent promoter"
          |
          misc_feature note="last base of an XhoI site"

                   70        80        90        100       110       120       
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ctacctggcgagcctggagcacgagcgggttcgcttcgtacggcgctgagcgacagtcac
              |===============|
              promoter note="proposed rpoN-dependent promoter"

</pre>
</td></tr></table><p>