seqret.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: hsfau.fasta</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
&gt;HSFAU X65923.1 H.sapiens fau mRNA
ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
tcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccc
tgactaccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggccc
gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
tctaataaaaaagccacttagttcagtcaaaaaaaaaa
</pre>
</td></tr></table><p>

<a name="output.2"></a>
<h3>Output files for usage example 2</h3>
<p><h3>File: hsall.seq</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
&gt;HS989235 H45989.1 yo13c02.s1 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone IMAGE:177794 3', mRNA sequence.
ccggnaagctcancttggaccaccgactctcgantgnntcgccgcgggagccggntggan
aacctgagcgggactggnagaaggagcagagggaggcagcacccggcgtgacggnagtgt
gtggggcactcaggccttccgcagtgtcatctgccacacggaaggcacggccacgggcag
gggggtctatgatcttctgcatgcccagctggcatggccccacgtagagtggnntggcgt
ctcggtgctggtcagcgacacgttgtcctggctgggcaggtccagctcccggaggacctg
gggcttcagcttcccgtagcgctggctgcagtgacggatgctcttgcgctgccatttctg
ggtgctgtcactgtccttgctcactccaaaccagttcggcggtccccctgcggatggtct
gtgttgatggacgtttgggctttgcagcaccggccgccgagttcatggtngggtnaagag
atttgggttttttcn
&gt;HSCAD5 X59796.1 H.sapiens mRNA for cadherin-5
ctccactcacgctcagccctggacggacaggcagtccaacggaacagaaacatccctcag
cccacaggcacgatctgttcctcctgggaagatgcagaggctcatgatgctcctcgccac
atcgggcgcctgcctgggcctgctggcagtggcagcagtggcagcagcaggtgctaaccc
tgcccaacgggacacccacagcctgctgcccacccaccggcgccaaaagagagattggat
ttggaaccagatgcacattgatgaagagaaaaacacctcacttccccatcatgtaggcaa
gatcaagtcaagcgtgagtcgcaagaatgccaagtacctgctcaaaggagaatatgtggg
caaggtcttccgggtcgatgcagagacaggagacgtgttcgccattgagaggctggaccg
ggagaatatctcagagtaccacctcactgctgtcattgtggacaaggacactggcgaaaa
cctggagactccttccagcttcaccatcaaagttcatgacgtgaacgacaactggcctgt
gttcacgcatcggttgttcaatgcgtccgtgcctgagtcgtcggctgtggggacctcagt
catctctgtgacagcagtggatgcagacgaccccactgtgggagaccacgcctctgtcat
gtaccaaatcctgaaggggaaagagtattttgccatcgataattctggacgtattatcac
aataacgaaaagcttggaccgagagaagcaggccaggtatgagatcgtggtggaagcgcg
agatgcccagggcctccggggggactcgggcacggccaccgtgctggtcactctgcaaga
catcaatgacaacttccccttcttcacccagaccaagtacacatttgtcgtgcctgaaga
cacccgtgtgggcacctctgtgggctctctgtttgttgaggacccagatgagccccagaa
ccggatgaccaagtacagcatcttgcggggcgactaccaggacgctttcaccattgagac
aaaccccgcccacaacgagggcatcatcaagcccatgaagcctctggattatgaatacat
ccagcaatacagcttcatagtcgaggccacagaccccaccatcgacctccgatacatgag
ccctcccgcgggaaacagagcccaggtcattatcaacatcacagatgtggacgagccccc
cattttccagcagcctttctaccacttccagctgaaggaaaaccagaagaagcctctgat
tggcacagtgctggccatggaccctgatgcggctaggcatagcattggatactccatccg
caggaccagtgacaagggccagttcttccgagtcacaaaaaagggggacatttacaatga
gaaagaactggacagagaagtctacccctggtataacctgactgtggaggccaaagaact
ggattccactggaacccccacaggaaaagaatccattgtgcaagtccacattgaagtttt
ggatgagaatgacaatgccccggagtttgccaagccctaccagcccaaagtgtgtgagaa
cgctgtccatggccagctggtcctgcagatctccgcaatagacaaggacataacaccacg
aaacgtgaagttcaaattcatcttgaatactgagaacaactttaccctcacggataatca
cgataacacggccaacatcacagtcaagtatgggcagtttgaccgggagcataccaaggt
ccacttcctacccgtggtcatctcagacaatgggatgccaagtcgcacgggcaccagcac
gctgaccgtggccgtgtgcaagtgcaacgagcagggcgagttcaccttctgcgaggatat
ggccgcccaggtgggcgtgagcatccaggcagtggtagccatcttactctgcatcctcac
catcacagtgatcaccctgctcatcttcctgcggcggcggctccggaagcaggcccgcgc
gcacggcaagagcgtgccggagatccacgagcagctggtcacctacgacgaggagggcgg
cggcgagatggacaccaccagctacgatgtgtcggtgctcaactcggtgcgccgcggcgg
ggccaagcccccgcggcccgcgctggacgcccggccttccctctatgcgcaggtgcagaa
gccaccgaggcacgcgcctggggcacacggagggcccggggagatggcagccatgatcga
ggtgaagaaggacgaggcggaccacgacggcgacggccccccctacgacacgctgcacat
ctacggctacgagggctccgagtccatagccgagtccctcagctccctgggcaccgactc


<font color=red>  [Part of this file has been deleted for brevity]</font>

aacaaaaaaagagaatgttacaccaatatccttgatgaacatcgatgcaaaaatcctcaa
taaaatactggcaaactgaatccagcagcacatcaaaaagcttatcctccatgatcaagt
gggcttcatccctgccatgcaaggctggttcaacatacgaaatcaataaacataatccag
catataaacagaaccaaagacacaaaccatatgattatctcaatagatgcagaaaaggcc
tttgacaaaattcaacaatgcttcatgctaaaaactctcaataaattaggtattgatggg
acatatctcaaaataataagagctatctatgacaaacccacagccaatatcatactgagt
ggacaaaaactggaagcattccctttgaaaactggcacaaggcagggatgccctctctca
ccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaggaa
ataaagggcattcaattaggaaaagaggaaggtgaaattgtccctgtttgcagatgacat
gattgtatatctagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaa
cttcagcaaagtctcaggatataaaatcagtgtgcaaaaatcacaagtattcctatgcac
caataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaa
gagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaa
ctacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatg
cttatgggtaggaagaatcatatcgtgaaaatggtcatactgcccaaggtaatttataga
ttcaatgccatccccatcaagctaccaatgactttcttcacagaactggaaaaaactact
ttaaagttcatatggaatcaaaaaagagcccacatcaccaaggcaatcctaagccaaaag
aacaaagctggaggcatcacgctacctgacttcaaactatactacaatgctacggtaacc
aaaacagcatggtactggtaccaaaacagagatctagaccaatggaacagaacagagccc
tcagaaataatgccgcatatctacaactatccgatctttgacaaacctgagagaaacaag
caatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgt
agaaagctgaaactggatccttccttacaccttatacaaaaattaattcaagatggatta
aagacttaaacattagacctaaaaccataaaaaccctagaaaaaaacctaggcaatacca
ttcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaacgaatggcaacaa
aagacaaaatggacaaacgggatctaattaaactaaagagcttctgcacagctaaagaaa
ctaccatcagagtgaacaggcaacctacaaaatgggagaaaatttttgcaatctactcat
ctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaac
aaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacat
ttatgtaatcaaaaaacacatgaaaaaatgctcatcatcactagccatcagagaaatgca
aatcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtc
aggaaacaacaggtgctggagaggatgtggagaaacaggaacaacttttacactgttggt
gggactgtaaactagttcaaccattgcggaagtcagtgtggcaattcctcaggaatctag
aactagaaataccatttgacccagccatcccattactgggtagatacccaaaggattata
aatcatgctgctataaagacacatgcacacgtatgtttattgcagcactattcacaatag
caaagacttggaaccaacccaaatgtccaacaacgatagattggattaagaaaatgtggc
acatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtag
ggacatggatgaagctggaaactatcattctcagcaaactatcacaaggacaataaacca
aacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacatga
agaggaacatcacactctggggactgttatggggtggggggcaggggcagggatagcact
aggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccaacatggcacat
gtatacatatataacaaacctgccgttgtgcacatgtaccctaaaacttgaagtataata
ataaaaaaaagttatcctattaaaactgatctcacacatccgtagagccattatcaagtc
tttctctttgaaacagacagaaatttagtgttttctcagtcagttaac
&gt;HSA203YC1 Z52466.1 H.sapiens (D1S2660) DNA segment containing (CA) repeat; clone AFMa203yc1; single read.
agctgtgtgcacacaacatganggggcacacatgcacatgcacacatgcccacatgcata
tgcacacacacacacacacacacacacacattcatgcccaagcacgcccaccctcatgtc
tcaccatgtgcacataacacacagtcacatataccctggcacacatgcccacatgcagac
acgaaacacaggcccacgnttncatgcacacaggtatgggcacacataccatgcacacat
aangacaaataccaggccagacatgatttgcccctgctggtgtcactgttaagtgtgaca
gacaagcagaggacacacacccacctgggacgcggggcttcaggagagaggcagacctaa
tagggcccggattcggggctggggaggct
</pre>
</td></tr></table><p>

<a name="output.3"></a>
<h3>Output files for usage example 3</h3>
<p><h3>File: hsfau.embl</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
ID   HSFAU      standard; DNA; UNC; 518 BP.
AC   X65923;
SV   X65923.1
DE   H.sapiens fau mRNA
KW   fau gene.
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Primates; Catarrhini; Hominidae; Homo.
FH   Key             Location/Qualifiers
FH
FT   source          1..518
FT                   /chromosome="11q"
FT                   /db_xref="taxon:9606"
FT                   /organism="Homo sapiens"
FT                   /tissue_type="placenta"
FT                   /clone_lib="cDNA"
FT                   /clone="pUIA 631"
FT                   /map="13"
FT   misc_feature    57..278
FT                   /note="ubiquitin like part"
FT   CDS             57..458
FT                   /db_xref="SWISS-PROT:P35544"
FT                   /db_xref="SWISS-PROT:Q05472"
FT                   /gene="fau"
FT                   /protein_id="CAA46716.1"
FT                   /translation="MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAG
FT                   APLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTG
FT                   RAKRRMQYNRRFVNVVPTFGKKKGPNANS"
FT   misc_feature    98..102
FT                   /note="nucleolar localization signal"
FT   misc_feature    279..458
FT                   /note="S30 part"
FT   polyA_signal    484..489
FT   polyA_site      509
SQ   Sequence 518 BP; 125 A; 139 C; 148 G; 106 T; 0 other;
     ttcctctttc tcgactccat cttcgcggta gctgggaccg ccgttcagtc gccaatatgc        60
     agctctttgt ccgcgcccag gagctacaca ccttcgaggt gaccggccag gaaacggtcg       120
     cccagatcaa ggctcatgta gcctcactgg agggcattgc cccggaagat caagtcgtgc       180
     tcctggcagg cgcgcccctg gaggatgagg ccactctggg ccagtgcggg gtggaggccc       240
     tgactaccct ggaagtagca ggccgcatgc ttggaggtaa agttcatggt tccctggccc       300
     gtgctggaaa agtgagaggt cagactccta aggtggccaa acaggagaag aagaagaaga       360
     agacaggtcg ggctaagcgg cggatgcagt acaaccggcg ctttgtcaac gttgtgccca       420
     cctttggcaa gaagaagggc cccaatgcca actcttaagt cttttgtaat tctggctttc       480
     tctaataaaa aagccactta gttcagtcaa aaaaaaaa                               518
//
</pre>
</td></tr></table><p>

<a name="output.5"></a>
<h3>Output files for usage example 5</h3>
<p><h3>File: hsfau.gcg</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
!!NA_SEQUENCE 1.0

H.sapiens fau mRNA

HSFAU  Length: 518  Type: N  Check: 2981 ..

   1 ttcctctttc tcgactccat cttcgcggta gctgggaccg ccgttcagtc

  51 gccaatatgc agctctttgt ccgcgcccag gagctacaca ccttcgaggt

 101 gaccggccag gaaacggtcg cccagatcaa ggctcatgta gcctcactgg

 151 agggcattgc cccggaagat caagtcgtgc tcctggcagg cgcgcccctg

 201 gaggatgagg ccactctggg ccagtgcggg gtggaggccc tgactaccct

 251 ggaagtagca ggccgcatgc ttggaggtaa agttcatggt tccctggccc

 301 gtgctggaaa agtgagaggt cagactccta aggtggccaa acaggagaag

 351 aagaagaaga agacaggtcg ggctaagcgg cggatgcagt acaaccggcg

 401 ctttgtcaac gttgtgccca cctttggcaa gaagaagggc cccaatgcca

 451 actcttaagt cttttgtaat tctggctttc tctaataaaa aagccactta

 501 gttcagtcaa aaaaaaaa

</pre>
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<a name="output.8"></a>
<h3>Output files for usage example 8</h3>
<p><h3>File: hsfau.fasta</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
&gt;HSFAU X65923.1 H.sapiens fau mRNA
ttttttttttgactgaactaagtggcttttttattagagaaagccagaattacaaaagac
ttaagagttggcattggggcccttcttcttgccaaaggtgggcacaacgttgacaaagcg
ccggttgtactgcatccgccgcttagcccgacctgtcttcttcttcttcttctcctgttt
ggccaccttaggagtctgacctctcacttttccagcacgggccagggaaccatgaacttt
acctccaagcatgcggcctgctacttccagggtagtcagggcctccaccccgcactggcc
cagagtggcctcatcctccaggggcgcgcctgccaggagcacgacttgatcttccggggc
aatgccctccagtgaggctacatgagccttgatctgggcgaccgtttcctggccggtcac
ctcgaaggtgtgtagctcctgggcgcggacaaagagctgcatattggcgactgaacggcg
gtcccagctaccgcgaagatggagtcgagaaagaggaa
</pre>
</td></tr></table><p>

<a name="output.9"></a>
<h3>Output files for usage example 9</h3>
<p><h3>File: hsfau.fasta</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
&gt;HSFAU X65923.1 H.sapiens fau mRNA
tctttctcgactccatcttcg
</pre>
</td></tr></table><p>

<a name="output.10"></a>
<h3>Output files for usage example 10</h3>
<p><h3>File: hsfau.fasta</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
&gt;HSFAU X65923.1 H.sapiens fau mRNA
tctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgcagct
ctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcgccca
gatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgctcct
ggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccctgac
taccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggcccgtgc
tggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaagaagac
aggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgcccacctt
tggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttctcta
ataaaaaagccacttagttcagtcaaaaaa
</pre>
</td></tr></table><p>