wordfinder.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: wordfinder.error</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
</pre>
</td></tr></table><p>
<p><h3>File: eclac.wordfinder</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
########################################
# Program: wordfinder
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: wordfinder
#    [-asequence] tembl:eclac
#    [-bsequence] "tembl:ec*"
#    -wordlen 50
#    -gapextend 3.0
# Align_format: simple
# Report_file: eclac.wordfinder
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: ECLAC
# 2: ECLAC
# Matrix: EDNAFULL
# Gap_penalty: 30.0
# Extend_penalty: 3.0
#
# Length: 7477
# Identity:    7477/7477 (100.0%)
# Similarity:  7477/7477 (100.0%)
# Gaps:           0/7477 ( 0.0%)
# Score: 37385.0
# 
# Wordscore:7477
# Alignlength:7477
#
#=======================================

ECLAC              1 gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgccc     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLAC              1 gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgccc     50

ECLAC             51 ggaagagagtcaattcagggtggtgaatgtgaaaccagtaacgttatacg    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLAC             51 ggaagagagtcaattcagggtggtgaatgtgaaaccagtaacgttatacg    100

ECLAC            101 atgtcgcagagtatgccggtgtctcttatcagaccgtttcccgcgtggtg    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLAC            101 atgtcgcagagtatgccggtgtctcttatcagaccgtttcccgcgtggtg    150

ECLAC            151 aaccaggccagccacgtttctgcgaaaacgcgggaaaaagtggaagcggc    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLAC            151 aaccaggccagccacgtttctgcgaaaacgcgggaaaaagtggaagcggc    200

ECLAC            201 gatggcggagctgaattacattcccaaccgcgtggcacaacaactggcgg    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||


<font color=red>  [Part of this file has been deleted for brevity]</font>

ECLAC           3787 tgctgattacgaccgctcacgcgtggcagcatcaggggaaaaccttattt   3836
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2501 tgctgattacgaccgctcacgcgtggcagcatcaggggaaaaccttattt   2550

ECLAC           3837 atcagccggaaaacctaccggattgatggtagtggtcaaatggcgattac   3886
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2551 atcagccggaaaacctaccggattgatggtagtggtcaaatggcgattac   2600

ECLAC           3887 cgttgatgttgaagtggcgagcgatacaccgcatccggcgcggattggcc   3936
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2601 cgttgatgttgaagtggcgagcgatacaccgcatccggcgcggattggcc   2650

ECLAC           3937 tgaactgccagctggcgcaggtagcagagcgggtaaactggctcggatta   3986
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2651 tgaactgccagctggcgcaggtagcagagcgggtaaactggctcggatta   2700

ECLAC           3987 gggccgcaagaaaactatcccgaccgccttactgccgcctgttttgaccg   4036
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2701 gggccgcaagaaaactatcccgaccgccttactgccgcctgttttgaccg   2750

ECLAC           4037 ctgggatctgccattgtcagacatgtataccccgtacgtcttcccgagcg   4086
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2751 ctgggatctgccattgtcagacatgtataccccgtacgtcttcccgagcg   2800

ECLAC           4087 aaaacggtctgcgctgcgggacgcgcgaattgaattatggcccacaccag   4136
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2801 aaaacggtctgcgctgcgggacgcgcgaattgaattatggcccacaccag   2850

ECLAC           4137 tggcgcggcgacttccagttcaacatcagccgctacagtcaacagcaact   4186
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2851 tggcgcggcgacttccagttcaacatcagccgctacagtcaacagcaact   2900

ECLAC           4187 gatggaaaccagccatcgccatctgctgcacgcggaagaaggcacatggc   4236
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2901 gatggaaaccagccatcgccatctgctgcacgcggaagaaggcacatggc   2950

ECLAC           4237 tgaatatcgacggtttccatatggggattggtggcgacgactcctggagc   4286
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          2951 tgaatatcgacggtttccatatggggattggtggcgacgactcctggagc   3000

ECLAC           4287 ccgtcagtatcggcggaattccagctgagcgccggtcgctaccattacca   4336
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ECLACZ          3001 ccgtcagtatcggcggaattccagctgagcgccggtcgctaccattacca   3050

ECLAC           4337 gttggtctggtgtcaaaaataataataa   4364
                     ||||||||||||||||||||||||||||
ECLACZ          3051 gttggtctggtgtcaaaaataataataa   3078


#---------------------------------------
#---------------------------------------
</pre>
</td></tr></table><p>