etandem.itable

emboss的linux版本的源代码

<table border cellspacing=0 cellpadding=3 bgcolor="#ccccff">
<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Standard (Mandatory) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>[-sequence]<br>(Parameter 1)</td>
<td>Nucleotide sequence filename and optional format, or reference (input USA)</td>
<td>Readable sequence</td>
<td><b>Required</b></td>
</tr>

<tr>
<td>-minrepeat</td>
<td>Minimum repeat size</td>
<td>Integer, 2 or higher</td>
<td>10</td>
</tr>

<tr>
<td>-maxrepeat</td>
<td>Maximum repeat size</td>
<td>Integer, same as -minrepeat or higher</td>
<td>Same as -minrepeat</td>
</tr>

<tr>
<td>[-outfile]<br>(Parameter 2)</td>
<td>Output report file name</td>
<td>Report output file</td>
<td><i>&lt;*&gt;</i>.etandem</td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Additional (Optional) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td colspan=4>(none)</td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Advanced (Unprompted) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>-threshold</td>
<td>Threshold score</td>
<td>Any integer value</td>
<td>20</td>
</tr>

<tr>
<td>-mismatch</td>
<td>Allow N as a mismatch</td>
<td>Boolean value Yes/No</td>
<td>No</td>
</tr>

<tr>
<td>-uniform</td>
<td>Allow uniform consensus</td>
<td>Boolean value Yes/No</td>
<td>No</td>
</tr>

<tr>
<td>-origfile</td>
<td>Sanger Centre program tandem output file (optional)</td>
<td>Output file</td>
<td><i>&lt;*&gt;</i>.etandem</td>
</tr>

</table>