polydot.itable

emboss的linux版本的源代码

<table border cellspacing=0 cellpadding=3 bgcolor="#ccccff">
<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Standard (Mandatory) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>[-sequences]<br>(Parameter 1)</td>
<td>File containing a sequence alignment</td>
<td>Readable set of sequences</td>
<td><b>Required</b></td>
</tr>

<tr>
<td>-wordsize</td>
<td>Word size</td>
<td>Integer 2 or more</td>
<td>6</td>
</tr>

<tr>
<td>-outfeat</td>
<td>Output features UFO</td>
<td>Writeable feature table</td>
<td><i>unknown.gff</i></td>
</tr>

<tr>
<td>-graph</td>
<td>Graph type</td>
<td>EMBOSS has a list of known devices, including ps, hpgl, hp7470, hp7580, meta, cps, x11, tekt, tek, none, data, xterm, png</td>
<td><i>EMBOSS_GRAPHICS</i> value, or x11</td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Additional (Optional) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>-[no]boxit</td>
<td>Draw a box around each dotplot</td>
<td>Boolean value Yes/No</td>
<td>Yes</td>
</tr>

<tr>
<td>-dumpfeat</td>
<td>Dump all matches as feature files</td>
<td>Toggle value Yes/No</td>
<td>No</td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Advanced (Unprompted) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>-gap</td>
<td>This specifies the size of the gap that is used to separate the individual dotplots in the display. The size is measured in residues, as displayed in the output.</td>
<td>Integer 0 or more</td>
<td>10</td>
</tr>

</table>