cutseq.usage

emboss的linux版本的源代码

<b>Here is a sample session with cutseq</b>
<p>
To remove bases 10 to 12 from a database entry and write to the new sequence file 'gatta2.seq': 
<p>

<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>cutseq tembl:paamir gatta2.seq -from=10 -to=12 </b>
Removes a specified section from a sequence.

</pre></td></tr></table><p>
<p>
<a href="#input.1">Go to the input files for this example</a><br><a href="#output.1">Go to the output files for this example</a><p><p>
<p>
<b>Example 2</b>
<p>
To remove the first 20 bases from 'tembl:paamir' and write it to 'jsh.seq':  
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<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>cutseq tembl:paamir -from=1 -to=20 -out=jsh.seq </b>
Removes a specified section from a sequence.

</pre></td></tr></table><p>
<p>
<a href="#output.2">Go to the output files for this example</a><p><p>
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<b>Example 3</b>
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If the default start and end positions are accepted, then all of the sequence is removed! 
<p>

<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>

% <b>cutseq tembl:paamir starta.seq -sbeg=-1000 -send=1290 </b>
Removes a specified section from a sequence.
Start of region to delete [1168]: <b></b>
End of region to delete [1290]: <b></b>

</pre></td></tr></table><p>
<p>
<a href="#output.3">Go to the output files for this example</a><p><p>