garnier.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: amic_pseae.garnier</h3>
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<pre>
########################################
# Program: garnier
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: garnier
#    -sequence tsw:amic_pseae
# Report_format: tagseq
# Report_file: amic_pseae.garnier
########################################

#=======================================
#
# Sequence: AMIC_PSEAE     from: 1   to: 384
# HitCount: 111
#
# DCH = 0, DCS = 0
# 
#  Please cite:
#  Garnier, Osguthorpe and Robson (1978) J. Mol. Biol. 120:97-120
# 
#
#=======================================

          .   10    .   20    .   30    .   40    .   50
      GSHQERPLIGLLFSETGVTADIERSHAYGALLAVEQLNREGGVGGRPIET
helix                   HHHHHHHHHHHHHHHHHHH             
sheet      EE EEEEE                                 EEEE
turns        T                              TTTT        
 coil CCCCC        CCCCC                   C    CCCC    
          .   60    .   70    .   80    .   90    .  100
      LSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADAL
helix               HHHHHH            HHHH H     HHHHHH 
sheet E         EEEE           EEEE          EEEE      E
turns  TT TT   T          TTTTT    TTT    T T           
 coil    C  CCC                                         
          .  110    .  120    .  130    .  140    .  150
      LCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYI
helix                              HHH                  
sheet EEE    E       EE           E   EEEE    EEEEE     
turns       T TTT  TT  T     TT           TT T     TTTT 
 coil    CCC     CC     CCCCC  CCC          C          C
          .  160    .  170    .  180    .  190    .  200
      YPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVV
helix       HHHH                       HHHHHHHHHHHHH    
sheet           EEE       EEEEEEE                   EEEE
turns   TTT        TTT             TTTT                 
 coil CC   C          CCCC       CC                     
          .  210    .  220    .  230    .  240    .  250
      FSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDVAEGQV
helix          HHHHHHH                HHHHHHHHHHHHHHHHH 
sheet EEEE            EE         EEE                   E
turns                   TTTTTT                          
 coil     CCCCC               CCC   CC                  
          .  260    .  270    .  280    .  290    .  300
      VVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQ
helix               HHHH           HHHHHHHHHHHHH    HHHH
sheet EEEE   E          EE                      E       
turns     TTT T   T       TTT   TT                      
 coil          CCC C         CCC  C              CCC    
          .  310    .  320    .  330    .  340    .  350
      AAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVF
helix       HHHHHHH                             HHH     
sheet              E  EEEE     EEEEE         EEE      EE
turns               TT     T        TT   T         TTT  
 coil CCCCCC              C CCC       CCC CCC           
          .  360    .  370    .  380
      QVRWQSPEPIRPDPYVVVHNLDDWSASMGGGPLP
helix                                   
sheet EE           EEEEEEE     E        
turns   TT    TT           TTT  TTT     
 coil     CCCC  CCC       C   C    CCCCC

#---------------------------------------
#
#  Residue totals: H:111   E: 98   T: 81   C: 94
#         percent: H: 30.2 E: 26.6 T: 22.0 C: 25.5
#
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 111
#---------------------------------------
</pre>
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