stretcher.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: hba_human.stretcher</h3>
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<pre>
########################################
# Program: stretcher
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: stretcher
#    [-asequence] tsw:hba_human
#    [-bsequence] tsw:hbb_human
# Align_format: markx0
# Report_file: hba_human.stretcher
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 12
# Extend_penalty: 2
#
# Length: 148
# Identity:      64/148 (43.2%)
# Similarity:    89/148 (60.1%)
# Gaps:           9/148 ( 6.1%)
# Score: 272
# 
#
#=======================================

                10        20        30        40         
HBA_HU V-LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DL
       : :.: .:. : : ::::  .  : : ::: :. . .: :. .:  : ::
HBB_HU VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDL
               10          20        30        40        

       50             60        70        80        90   
HBA_HU SH-----GSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRV
       :      :. .:: :::::  : .. .::.:..    . ::.::  :: :
HBB_HU STPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHV
       50        60        70        80        90        

           100       110       120       130       140 
HBA_HU DPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
       :: ::.:: . :.  :: :   :::: : :.  : .: :.  :  :: 
HBB_HU DPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH
      100       110       120       130       140      


#---------------------------------------
#---------------------------------------
</pre>
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