tfscan.itable

emboss的linux版本的源代码

<table border cellspacing=0 cellpadding=3 bgcolor="#ccccff">
<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Standard (Mandatory) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>[-sequence]<br>(Parameter 1)</td>
<td>Nucleotide sequence(s) filename and optional format, or reference (input USA)</td>
<td>Readable sequence(s)</td>
<td><b>Required</b></td>
</tr>

<tr>
<td>-menu</td>
<td>Select class</td>
<td><table><tr><td>F</td> <td><i>(fungi)</i></td></tr><tr><td>I</td> <td><i>(insect)</i></td></tr><tr><td>P</td> <td><i>(plant)</i></td></tr><tr><td>V</td> <td><i>(vertebrate)</i></td></tr><tr><td>O</td> <td><i>(other)</i></td></tr><tr><td>C</td> <td><i>(Custom)</i></td></tr></table></td>
<td>V</td>
</tr>

<tr>
<td>-custom</td>
<td>Transfac database data file (optional)</td>
<td>Data file</td>
<td><i>File in the data file path</i></td>
</tr>

<tr>
<td>-mismatch</td>
<td>Number of mismatches</td>
<td>Integer 0 or more</td>
<td>0</td>
</tr>

<tr>
<td>[-outfile]<br>(Parameter 2)</td>
<td>Output file name</td>
<td>Output file</td>
<td><i>&lt;*&gt;</i>.tfscan</td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Additional (Optional) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>-minlength</td>
<td>Display matches equal to or above this length</td>
<td>Integer 1 or more</td>
<td>1</td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Advanced (Unprompted) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td colspan=4>(none)</td>
</tr>

</table>