makefile

emboss的linux版本的源代码

# Makefile.in generated by automake 1.9.6 from Makefile.am.
# doc/programs/html/Makefile.  Generated from Makefile.in by configure.

# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005  Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.



srcdir = .
top_srcdir = ../../..

pkglibdir = $(libdir)/EMBOSS
pkgincludedir = $(includedir)/EMBOSS
top_builddir = ../../..
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
INSTALL = /usr/bin/install -c
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = x86_64-redhat-linux-gnu
host_triplet = x86_64-redhat-linux-gnu
subdir = doc/programs/html
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
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	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/sgi.m4 \
	$(top_srcdir)/configure.in
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
	$(ACLOCAL_M4)
mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
CONFIG_CLEAN_FILES =
SOURCES =
DIST_SOURCES =
am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
am__vpath_adj = case $$p in \
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am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
am__installdirs = "$(DESTDIR)$(pkgdatadir)" "$(DESTDIR)$(pkgdata2dir)"
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pkgdata2DATA_INSTALL = $(INSTALL_DATA)
DATA = $(pkgdata_DATA) $(pkgdata2_DATA)
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
pkgdatadir = $(prefix)/share/$(PACKAGE)/doc/html/emboss/apps
ACLOCAL = ${SHELL} /m1/emboss/emboss/missing --run aclocal-1.9
AJAX_FIXED_ROOT = \"/m1/emboss/emboss/emboss\"
AMDEP_FALSE = #
AMDEP_TRUE = 
AMPNG_FALSE = #
AMPNG_TRUE = 
AMTAR = ${SHELL} /m1/emboss/emboss/missing --run tar
AR = ar
AUTOCONF = ${SHELL} /m1/emboss/emboss/missing --run autoconf
AUTOHEADER = ${SHELL} /m1/emboss/emboss/missing --run autoheader
AUTOMAKE = ${SHELL} /m1/emboss/emboss/missing --run automake-1.9
AWK = gawk
CC = gcc
CCDEPMODE = depmode=gcc3
CFLAGS =   -O2 -D__amd64__
CPP = gcc -E
CPPFLAGS = -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE  -DLENDIAN -DNO_AUTH
CXX = g++
CXXCPP = g++ -E
CXXDEPMODE = depmode=gcc3
CXXFLAGS = -g -O2 
CYGPATH_W = echo
DEFS = -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\" -DVERSION=\"4.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_UNISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 
DEPDIR = .deps
ECHO = echo
ECHO_C = 
ECHO_N = -n
ECHO_T = 
EGREP = grep -E
EMBOSS_TOP = /m1/emboss/emboss
EXEEXT = 
F77 = f95
FFLAGS = -g -O2
HAVE_MEMMOVE = 
HAVE_STRERROR = 
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = ${SHELL} $(install_sh) -c -s
ISAIXIA64 = 
ISAIXIA64_FALSE = 
ISAIXIA64_TRUE = #
ISCYGWIN = 
ISCYGWIN_FALSE = 
ISCYGWIN_TRUE = #
ISSHARED_FALSE = #
ISSHARED_TRUE = 
JAVA_OK = 
LDFLAGS = 
LIBOBJS = 
LIBS = -lm  -lgd -lpng -lz -lm
LIBTOOL = $(SHELL) $(top_builddir)/libtool
LN_S = ln -s
LTLIBOBJS = 
MAKEINFO = ${SHELL} /m1/emboss/emboss/missing --run makeinfo
NEEDAJAX = 
NEEDAJAX_FALSE = 
NEEDAJAX_TRUE = #
OBJEXT = o
PACKAGE = EMBOSS
PACKAGE_BUGREPORT = 
PACKAGE_NAME = 
PACKAGE_STRING = 
PACKAGE_TARNAME = 
PACKAGE_VERSION = 
PATH_SEPARATOR = :
PCRE_DATE = 21-May-2003
PCRE_LIB_VERSION = 0:1:0
PCRE_MAJOR = 4
PCRE_MINOR = 3
PCRE_POSIXLIB_VERSION = 0:0:0
PCRE_VERSION = 4.3
POSIX_MALLOC_THRESHOLD = -DPOSIX_MALLOC_THRESHOLD=10
PURIFY_FALSE = 
PURIFY_TRUE = #
RANLIB = ranlib
SED = /bin/sed
SET_MAKE = 
SHELL = /bin/sh
STRIP = strip
VERSION = 4.1.0
XLIB =  -L/usr/lib64 -lX11 
X_CFLAGS = 
X_EXTRA_LIBS = 
X_LIBS =  -L/usr/lib64
X_PRE_LIBS =  -lSM -lICE
ac_ct_AR = ar
ac_ct_CC = gcc
ac_ct_CXX = g++
ac_ct_F77 = f95
ac_ct_RANLIB = ranlib
ac_ct_STRIP = strip
am__fastdepCC_FALSE = #
am__fastdepCC_TRUE = 
am__fastdepCXX_FALSE = #
am__fastdepCXX_TRUE = 
am__include = include
am__leading_dot = .
am__quote = 
am__tar = ${AMTAR} chof - "$$tardir"
am__untar = ${AMTAR} xf -
bindir = ${exec_prefix}/bin
build = x86_64-redhat-linux-gnu
build_alias = 
build_cpu = x86_64
build_os = linux-gnu
build_vendor = redhat
datadir = ${prefix}/share
exec_prefix = ${prefix}
havejavac = 
host = x86_64-redhat-linux-gnu
host_alias = 
host_cpu = x86_64
host_os = linux-gnu
host_vendor = redhat
includedir = ${prefix}/include
infodir = ${prefix}/info
install_sh = /m1/emboss/emboss/install-sh
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localstatedir = ${prefix}/var
mandir = ${prefix}/man
mkdir_p = mkdir -p --
oldincludedir = /usr/include
prefix = /usr/local
program_transform_name = s,x,x,
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
sysconfdir = ${prefix}/etc
target_alias = 
pkgdata_DATA = abiview.1.abiview.gif banana.1.banana.gif \
	chaos.1.chaos.gif cirdna.1.cirdna.gif \
	cpgplot.1.cpgplot.gif dan.2.dan.gif \
	dotmatcher.1.dotmatcher.gif dotpath.1.dotpath.gif \
	dottup.1.dottup.gif emboss_icon.gif findkm.1.findkm.gif \
	isochore.1.isochore.gif lindna.1.lindna.gif \
	octanol.1.octanol.gif pepinfo.1.pepinfo.gif \
	pepnet.1.pepnet.gif pepwheel.1.pepwheel.gif \
	pepwindow.1.pepwindow.gif pepwindowall.1.pepwindowall.gif \
	plotcon.1.plotcon.gif plotorf.1.plotorf.gif \
	plotorf.2.plotorf.gif polydot.1.polydot.gif \
	prettyplot.1.prettyplot.gif prettyplot.2.prettyplot.gif \
	syco.1.syco.gif tmap.1.tmap.gif wobble.1.wobble.gif \
	aaindexextract.html abiview.html acd_group.html acdc.html \
	acdlog.html acdpretty.html acdtable.html acdtrace.html \
	acdvalid.html ajtest.html alignment_consensus_group.html \
	alignment_differences_group.html \
	alignment_dot_plots_group.html alignment_global_group.html \
	alignment_local_group.html alignment_multiple_group.html \
	antigenic.html backtranambig.html backtranseq.html \
	banana.html biosed.html btwisted.html \
	cai.html chaos.html charge.html \
	checktrans.html chips.html cirdna.html codcmp.html \
	codcopy.html coderet.html compseq.html \
	cons.html cpgplot.html \
	cpgreport.html cusp.html cutgextract.html \
	cutseq.html dan.html dbiblast.html dbifasta.html \
	dbiflat.html dbigcg.html dbxfasta.html dbxflat.html \
	dbxgcg.html degapseq.html descseq.html \
	diffseq.html digest.html display_group.html distmat.html \
	dotmatcher.html dotpath.html dottup.html dreg.html \
	edialign.html einverted.html embossdata.html \
	embossversion.html emma.html emowse.html \
	entret.html enzyme_kinetics_group.html \
	epestfind.html eprimer3.html equicktandem.html \
	est2genome.html etandem.html extractfeat.html \
	extractseq.html feature_tables_group.html \
	findkm.html freak.html fuzznuc.html fuzzpro.html fuzztran.html \
	garnier.html geecee.html getorf.html groups.html \
	helixturnhelix.html hmm_group.html \
	hmoment.html iep.html index.html infoalign.html \
	information_group.html infoseq.html \
	isochore.html jembossctl.html

pkgdata2_DATA = lindna.html listor.html makenucseq.html makeprotseq.html \
	marscan.html maskfeat.html \
	maskseq.html matcher.html megamerger.html \
	menus_group.html merger.html msbar.html \
	mwcontam.html mwfilter.html \
	needle.html \
	newcpgreport.html newcpgseek.html newseq.html noreturn.html \
	notseq.html nthseq.html nucleic_2d_structure_group.html \
	nucleic_codon_usage_group.html \
	nucleic_codon_usage_nucleic_gene_finding_group.html \
	nucleic_composition_group.html \
	nucleic_cpg_islands_group.html \