📄 cutseq.txt
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ttcgccacta cggcgagcgg gtggtgttca tcggctcgga ctacatctat ccgcgggaaa 600 gcaaccatgt gatgcgccac ctgtatcgcc agcacggcgg cacggtgctc gaggaaatct 660 acattccgct gtatccctcc gacgacgact tgcagcgcgc cgtcgagcgc atctaccagg 720 cgcgcgccga cgtggtcttc tccaccgtgg tgggcaccgg caccgccgag ctgtatcgcg 780 ccatcgcccg tcgctacggc gacggcaggc ggccgccgat cgccagcctg accaccagcg 840 aggcggaggt ggcgaagatg gagagtgacg tggcagaggg gcaggtggtg gtcgcgcctt 900 acttctccag catcgatacg cccgccagcc gggccttcgt ccaggcctgc catggtttct 960 tcccggagaa cgcgaccatc accgcctggg ccgaggcggc ctactggcag accttgttgc 1020 tcggccgcgc cgcgcaggcc gcaggcaact ggcgggtgga agacgtgcag cggcacctgt 1080 acgacatcga catcgacgcg ccacaggggc cggtccgggt ggagcgccag aacaaccaca 1140 gccgcctgtc ttcgcgcatc gcggaaatcg atgcgcgcgg cgtgttccag gtccgctggc 1200 agtcgcccga accgattcgc cccgaccctt atgtcgtcgt gcataacctc gacgactggt 1260 ccgccagcat gggcggggga ccgctcccat gagcgccaac tcgctgctcg gcagcctgcg 1320 cgagttgcag gtgctggtcc tcaacccgcc gggggaggtc agcgacgccc tggtcttgca 1380 gctgatccgc atcggttgtt cggtgcgcca gtgctggccg ccgccggaag ccttcgacgt 1440 gccggtggac gtggtcttca ccagcatttt ccagaatggc caccacgacg agatcgctgc 1500 gctgctcgcc gccgggactc cgcgcactac cctggtggcg ctggtggagt acgaaagccc 1560 cgcggtgctc tcgcagatca tcgagctgga gtgccacggc gtgatcaccc agccgctcga 1620 tgcccaccgg gtgctgcctg tgctggtatc ggcgcggcgc atcagcgagg aaatggcgaa 1680 gctgaagcag aagaccgagc agctccagga ccgcatcgcc ggccaggccc ggatcaacca 1740 ggccaaggtg ttgctgatgc agcgccatgg ctgggacgag cgcgaggcgc accagcacct 1800 gtcgcgggaa gcgatgaagc ggcgcgagcc gatcctgaag atcgctcagg agttgctggg 1860 aaacgagccg tccgcctgag cgatccgggc cgaccagaac aataacaaga ggggtatcgt 1920 catcatgctg ggactggttc tgctgtacgt tggcgcggtg ctgtttctca atgccgtctg 1980 gttgctgggc aagatcagcg gtcgggaggt ggcggtgatc aacttcctgg tcggcgtgct 2040 gagcgcctgc gtcgcgttct acctgatctt ttccgcagca gccgggcagg gctcgctgaa 2100 ggccggagcg ctgaccctgc tattcgcttt tacctatctg tgggtggccg ccaaccagtt 2160 cctcgag 2167//Output file format cutseq writes a single sequence file. Output files for usage example File: gatta2.seq>PAAMIR X13776.1 Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase regulationggtaccgctcgagcatctgctcgatcaccaccagccgggcgacgggaactgcacgatctacctggcgagcctggagcacgagcgggttcgcttcgtacggcgctgagcgacagtcacaggagaggaaacggatgggatcgcaccaggagcggccgctgatcggcctgctgttctccgaaaccggcgtcaccgccgatatcgagcgctcgcacgcgtatggcgcattgctcgcggtcgagcaactgaaccgcgagggcggcgtcggcggtcgcccgatcgaaacgctgtcccaggaccccggcggcgacccggaccgctatcggctgtgcgccgaggacttcattcgcaaccggggggtacggttcctcgtgggctgctacatgtcgcacacgcgcaaggcggtgatgccggtggtcgagcgcgccgacgcgctgctctgctacccgaccccctacgagggcttcgagtattcgccgaacatcgtctacggcggtccggcgccgaaccagaacagtgcgccgctggcggcgtacctgattcgccactacggcgagcgggtggtgttcatcggctcggactacatctatccgcgggaaagcaaccatgtgatgcgccacctgtatcgccagcacggcggcacggtgctcgaggaaatctacattccgctgtatccctccgacgacgacttgcagcgcgccgtcgagcgcatctaccaggcgcgcgccgacgtggtcttctccaccgtggtgggcaccggcaccgccgagctgtatcgcgccatcgcccgtcgctacggcgacggcaggcggccgccgatcgccagcctgaccaccagcgaggcggaggtggcgaagatggagagtgacgtggcagaggggcaggtggtggtcgcgccttacttctccagcatcgatacgcccgccagccgggccttcgtccaggcctgccatggtttcttcccggagaacgcgaccatcaccgcctgggccgaggcggcctactggcagaccttgttgctcggccgcgccgcgcaggccgcaggcaactggcgggtggaagacgtgcagcggcacctgtacgacatcgacatcgacgcgccacaggggccggtccgggtggagcgccagaacaaccacagccgcctgtcttcgcgcatcgcggaaatcgatgcgcgcggcgtgttccaggtccgctggcagtcgcccgaaccgattcgccccgacccttatgtcgtcgtgcataacctcgacgactggtccgccagcatgggcgggggaccgctcccatgagcgccaactcgctgctcggcagcctgcgcgagttgcaggtgctggtcctcaacccgccgggggaggtcagcgacgccctggtcttgcagctgatccgcatcggttgttcggtgcgccagtgctggccgccgccggaagccttcgacgtgccggtggacgtggtcttcaccagcattttccagaatggccaccacgacgagatcgctgcgctgctcgccgccgggactccgcgcactaccctggtggcgctggtggagtacgaaagccccgcggtgctctcgcagatcatcgagctggagtgccacggcgtgatcacccagccgctcgatgcccaccgggtgctgcctgtgctggtatcggcgcggcgcatcagcgaggaaatggcgaagctgaagcagaagaccgagcagctccaggaccgcatcgccggccaggcccggatcaaccaggccaaggtgttgctgatgcagcgccatggctgggacgagcgcgaggcgcaccagcacctgtcgcgggaagcgatgaagcggcgcgagccgatcctgaagatcgctcaggagttgctgggaaacgagccgtccgcctgagcgatccgggccgaccagaacaataacaagaggggtatcgtcatcatgctgggactggttctgctgtacgttggcgcggtgctgtttctcaatgccgtctggttgctgggcaagatcagcggtcgggaggtggcggtgatcaacttcctggtcggcgtgctgagcgcctgcgtcgcgttctacctgatcttttccgcagcagccgggcagggctcgctgaaggccggagcgctgaccctgctattcgcttttacctatctgtgggtggccgccaaccagttcctcgag Output files for usage example 2 File: jsh.seq>PAAMIR X13776.1 Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase regulationtgctcgatcaccaccagccgggcgacgggaactgcacgatctacctggcgagcctggagcacgagcgggttcgcttcgtacggcgctgagcgacagtcacaggagaggaaacggatgggatcgcaccaggagcggccgctgatcggcctgctgttctccgaaaccggcgtcaccgccgatatcgagcgctcgcacgcgtatggcgcattgctcgcggtcgagcaactgaaccgcgagggcggcgtcggcggtcgcccgatcgaaacgctgtcccaggaccccggcggcgacccggaccgctatcggctgtgcgccgaggacttcattcgcaaccggggggtacggttcctcgtgggctgctacatgtcgcacacgcgcaaggcggtgatgccggtggtcgagcgcgccgacgcgctgctctgctacccgaccccctacgagggcttcgagtattcgccgaacatcgtctacggcggtccggcgccgaaccagaacagtgcgccgctggcggcgtacctgattcgccactacggcgagcgggtggtgttcatcggctcggactacatctatccgcgggaaagcaaccatgtgatgcgccacctgtatcgccagcacggcggcacggtgctcgaggaaatctacattccgctgtatccctccgacgacgacttgcagcgcgccgtcgagcgcatctaccaggcgcgcgccgacgtggtcttctccaccgtggtgggcaccggcaccgccgagctgtatcgcgccatcgcccgtcgctacggcgacggcaggcggccgccgatcgccagcctgaccaccagcgaggcggaggtggcgaagatggagagtgacgtggcagaggggcaggtggtggtcgcgccttacttctccagcatcgatacgcccgccagccgggccttcgtccaggcctgccatggtttcttcccggagaacgcgaccatcaccgcctgggccgaggcggcctactggcagaccttgttgctcggccgcgccgcgcaggccgcaggcaactggcgggtggaagacgtgcagcggcacctgtacgacatcgacatcgacgcgccacaggggccggtccgggtggagcgccagaacaaccacagccgcctgtcttcgcgcatcgcggaaatcgatgcgcgcggcgtgttccaggtccgctggcagtcgcccgaaccgattcgccccgacccttatgtcgtcgtgcataacctcgacgactggtccgccagcatgggcgggggaccgctcccatgagcgccaactcgctgctcggcagcctgcgcgagttgcaggtgctggtcctcaacccgccgggggaggtcagcgacgccctggtcttgcagctgatccgcatcggttgttcggtgcgccagtgctggccgccgccggaagccttcgacgtgccggtggacgtggtcttcaccagcattttccagaatggccaccacgacgagatcgctgcgctgctcgccgccgggactccgcgcactaccctggtggcgctggtggagtacgaaagccccgcggtgctctcgcagatcatcgagctggagtgccacggcgtgatcacccagccgctcgatgcccaccgggtgctgcctgtgctggtatcggcgcggcgcatcagcgaggaaatggcgaagctgaagcagaagaccgagcagctccaggaccgcatcgccggccaggcccggatcaaccaggccaaggtgttgctgatgcagcgccatggctgggacgagcgcgaggcgcaccagcacctgtcgcgggaagcgatgaagcggcgcgagccgatcctgaagatcgctcaggagttgctgggaaacgagccgtccgcctgagcgatccgggccgaccagaacaataacaagaggggtatcgtcatcatgctgggactggttctgctgtacgttggcgcggtgctgtttctcaatgccgtctggttgctgggcaagatcagcggtcgggaggtggcggtgatcaacttcctggtcggcgtgctgagcgcctgcgtcgcgttctacctgatcttttccgcagcagccgggcagggctcgctgaaggccggagcgctgaccctgctattcgcttttacctatctgtgggtggccgccaaccagttcctcgag Output files for usage example 3 File: starta.seq>PAAMIR X13776.1 Pseudomonas aeruginosa amiC and amiR gene for aliphatic amidase regulationData files None.Notes This can be used as a simple sequence editor.References None.Warnings You can delete a complete sequence and write out an empty sequence file.Diagnostic Error Messages None.Exit status It always exits with status 0Known bugs None.See also Program name Description biosed Replace or delete sequence sections codcopy Reads and writes a codon usage table degapseq Removes gap characters from sequences descseq Alter the name or description of a sequence entret Reads and writes (returns) flatfile entries extractalign Extract regions from a sequence alignment extractfeat Extract features from a sequence extractseq Extract regions from a sequence listor Write a list file of the logical OR of two sets of sequences makenucseq Creates random nucleotide sequences makeprotseq Creates random protein sequences maskfeat Mask off features of a sequence maskseq Mask off regions of a sequence newseq Type in a short new sequence noreturn Removes carriage return from ASCII files notseq Exclude a set of sequences and write out the remaining ones nthseq Writes one sequence from a multiple set of sequences pasteseq Insert one sequence into another revseq Reverse and complement a sequence seqret Reads and writes (returns) sequences seqretsplit Reads and writes (returns) sequences in individual files skipseq Reads and writes (returns) sequences, skipping first few splitter Split a sequence into (overlapping) smaller sequences trimest Trim poly-A tails off EST sequences trimseq Trim ambiguous bits off the ends of sequences union Reads sequence fragments and builds one sequence vectorstrip Strips out DNA between a pair of vector sequences yank Reads a sequence range, appends the full USA to a list fileAuthor(s) Gary Williams (gwilliam ⌨️ 快捷键说明
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