complex.txt

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        34                      PAAMIE           1065             0.6418
        35                      PAAMIR           2167             0.6562
        36                      PAAMIS           1130             0.6989
        37                        MMAM            366             0.7163
        38                       RNOPS           1493             0.6571
        39                    RNU68037           1218             0.6381
        40                   HSA203YC1            389             0.4327
        41                     HHTETRA           1272             0.3114
        42                    XLRHODOP           1684             0.7193
        43                     XL23808           4734             0.7180
        44                    AF123456           1510             0.5913
        45                    AF123457           1634             0.7254

  File: hs989235.fasta

>HS989235 H45989.1 yo13c02.s1 Soares adult brain N2b5HB55Y Homo sapiens cDNA cl
one IMAGE:177794 3', mRNA sequence.
ccggnaagctcancttggaccaccgactctcgantgnntcgccgcgggagccggntggan
aacctgagcgggactggnagaaggagcagagggaggcagcacccggcgtgacggnagtgt
gtggggcactcaggccttccgcagtgtcatctgccacacggaaggcacggccacgggcag
gggggtctatgatcttctgcatgcccagctggcatggccccacgtagagtggnntggcgt
ctcggtgctggtcagcgacacgttgtcctggctgggcaggtccagctcccggaggacctg
gggcttcagcttcccgtagcgctggctgcagtgacggatgctcttgcgctgccatttctg
ggtgctgtcactgtccttgctcactccaaaccagttcggcggtccccctgcggatggtct
gtgttgatggacgtttgggctttgcagcaccggccgccgagttcatggtngggtnaagag
atttgggttttttcn
>AB009602 AB009602.1 Schizosaccharomyces pombe mRNA for MET1 homolog, partial c
ds.
gttcgatgcctaaaataccttcttttgtccctacacagaccacagttttcctaatggctt
tacaccgactagaaattcttgtgcaagcactaattgaaagcggttggcctagagtgttac
cggtttgtatagctgagcgcgtctcttgccctgatcaaaggttcattttctctactttgg
aagacgttgtggaagaatacaacaagtacgagtctctcccccctggtttgctgattactg
gatacagttgtaatacccttcgcaacaccgcgtaactatctatatgaattattttccctt
tattatatgtagtaggttcgtctttaatcttcctttagcaagtcttttactgttttcgac
ctcaatgttcatgttcttaggttgttttggataatatgcggtcagtttaatcttcgttgt
ttcttcttaaaatatttattcatggtttaatttttggtttgtacttgttcaggggccagt
tcattatttactctgtttgtatacagcagttcttttatttttagtatgattttaatttaa
aacaattctaatggtcaaaaa
>HSCAD5 X59796.1 H.sapiens mRNA for cadherin-5
ctccactcacgctcagccctggacggacaggcagtccaacggaacagaaacatccctcag
cccacaggcacgatctgttcctcctgggaagatgcagaggctcatgatgctcctcgccac
atcgggcgcctgcctgggcctgctggcagtggcagcagtggcagcagcaggtgctaaccc
tgcccaacgggacacccacagcctgctgcccacccaccggcgccaaaagagagattggat
ttggaaccagatgcacattgatgaagagaaaaacacctcacttccccatcatgtaggcaa
gatcaagtcaagcgtgagtcgcaagaatgccaagtacctgctcaaaggagaatatgtggg
caaggtcttccgggtcgatgcagagacaggagacgtgttcgccattgagaggctggaccg
ggagaatatctcagagtaccacctcactgctgtcattgtggacaaggacactggcgaaaa
cctggagactccttccagcttcaccatcaaagttcatgacgtgaacgacaactggcctgt
gttcacgcatcggttgttcaatgcgtccgtgcctgagtcgtcggctgtggggacctcagt
catctctgtgacagcagtggatgcagacgaccccactgtgggagaccacgcctctgtcat
gtaccaaatcctgaaggggaaagagtattttgccatcgataattctggacgtattatcac
aataacgaaaagcttggaccgagagaagcaggccaggtatgagatcgtggtggaagcgcg
agatgcccagggcctccggggggactcgggcacggccaccgtgctggtcactctgcaaga
catcaatgacaacttccccttcttcacccagaccaagtacacatttgtcgtgcctgaaga
cacccgtgtgggcacctctgtgggctctctgtttgttgaggacccagatgagccccagaa
ccggatgaccaagtacagcatcttgcggggcgactaccaggacgctttcaccattgagac
aaaccccgcccacaacgagggcatcatcaagcccatgaagcctctggattatgaatacat
ccagcaatacagcttcatagtcgaggccacagaccccaccatcgacctccgatacatgag
ccctcccgcgggaaacagagcccaggtcattatcaacatcacagatgtggacgagccccc
cattttccagcagcctttctaccacttccagctgaaggaaaaccagaagaagcctctgat
tggcacagtgctggccatggaccctgatgcggctaggcatagcattggatactccatccg
caggaccagtgacaagggccagttcttccgagtcacaaaaaagggggacatttacaatga
gaaagaactggacagagaagtctacccctggtataacctgactgtggaggccaaagaact
ggattccactggaacccccacaggaaaagaatccattgtgcaagtccacattgaagtttt
ggatgagaatgacaatgccccggagtttgccaagccctaccagcccaaagtgtgtgagaa
cgctgtccatggccagctggtcctgcagatctccgcaatagacaaggacataacaccacg
aaacgtgaagttcaaattcatcttgaatactgagaacaactttaccctcacggataatca


  [Part of this file has been deleted for brevity]

gagccagttgtcaagaagagcagcagcagcagctcctgtctcctgcaggacagcagcagc
cctgctcactccacgagcacggtggcagcagcagcagcgagcgcaccaccagagggacgg
atgctcattcaggacatcccttccatccccagcagagggcacttggagagcacgtctgat
ttggttgtggactccacctactacagcagtttttaccagccatccctgtatccttactat
aacaacctgtacaactactcccagtaccaaatggcagtggccactgagtcttcctcaagt
gagacagggggtacgtttgtagggtcagccatgaaaaacagccttcgaagcctcccagca
acatacatgtcaagccagtcaggaaaacagtggcagatgaagggaatggagaaccgccat
gccatgagctcccagtaccggatgtgctcctactacccgcccacctcatacctgggccag
ggggttggcagtcccacctgcgtcacacagatactggcctcggaggacaccccctcctac
tcagagtcgaaagcgagagtgttttcgccgcccagcagccaggactcgggcctggggtgc
ctgtcgagcagcgagagcaccaagggagacctggagtgcgagccccaccaagagcccggc
gccttcgcggtgagcccggttcttgagggcgagtaggcgcggcgtcgggcggctgctgcg
cggcgttcactgttgccttgttctgttggggttgcgggggggcgttgggtttcttctttc
cggggcggggggggcacggcggggccgcggccgggccggcggggcggggcggggcgggac
ggggcggggcggagccgcgcgggggccgcagtccgggccggggccgccgtcgggtctcgg
cccgctcccgtcggggcggagcgtccgacgatcggcctccacgaaacgcggtgccgtgat
gtgtttgtagtggttcctcgtaggctccagacgttttctcctcgtatcgccaaattaacg
cgttttgcatattacagttgagtgcctcgacttagattgcaatataagcggccagcaaac
aagtctcaaaaaaaagttacgtgcgtttctgcgagtgttattttgttaagaacggctcac
agtgtcctcttcctgtgttacagaagccaacctgaaatgaaactagtctggaaaaattca
ttgttctctgtagttgcagctgtacctgaaataaaaatgttattgatgactgaaaaaaaa
aaaaaaaaaa
>AF123457 AF123457.1 Toxoplasma gondii enolase (ENO2) mRNA, complete cds.
tctaccgttactcaacttccaacaaaatggtggccatcaaggacatcactgctcgtcaga
tcctcgactcccgaggaaacccgaccgtcgaggttgacttgttgaccgatggcggctgct
tccgtgccgctgtccccagcggcgcatccactggcatctacgaggcgcttgagctccgtg
acaaggaccaaactaagttcatgggcaagggtgtgatgaaggccgtggagaacatccaca
agattatcaagccggcgcttattggcaaggacccgtgcgaccagaagggtattgacaagc
tgatggtcgaggagctcgatggaactaagaacgagtggggctggtgcaagtcgaagctcg
gcgcgaacgcgatcctggccgtctcgatggcttgctgccgcgccggcgctgctgccaagg
gcatgcccctgtacaagtacattgccactttggctggaaacccgacagacaagatggtaa
tgcccgtcccgttcttcaacgtcatcaacggcggctcccacgcaggcaacaaggtcgcga
tgcaggagttcatgatcgcccccgtcggcgcctccacaatccaagaggcgatccagatcg
gcgcggaagtgtaccagcacctgaaggtcgtcattaagaagaagtatggcctcgacgcca
cgaacgtcggcgacgagggtggcttcgcccccaacatcagcggcgccacggaggccctcg
acttgctgatggaggccatcaaggtgtctggtcacgaaggcaaggtcaagattgccgccg
acgtcgccgcttccgagttcttcctccaggacgacaaagtctatgacctagacttcaaga
ctccgaacaacgacaagtcgcaacgcaagactggcgaagagcttcgcaacctgtacaagg
acctgtgccagaagtatcccttcgtgtccatcgaggacccgttcgaccaggacgacttcc
acagctacgctcagctcaccaacgaggttggcgagaaggtccaaatcgtcggcgacgacc
tcctggtcaccaacccgacgcgcattgagaaggccgttcaggagaaagcgtgcaacggcc
tgcttctcaaggtgaaccagattggcacagtcagcgagtctatcgaggcctgccagcttg
cccagaagaacaagtggggcgttatggtttctcaccgctccggtgagactgaggactcct
tcatcgctgacctcgtcgtcggtctccgcaccgggcaaatcaagactggcgccccgtgca
gatccgagcgtctctgcaagtacaaccagctgatgcgtatcgaagagtcgctcggctccg
actgtcagtacgccggcgctggcttccgccatcccaactaagtggaaacggagtttcgac
tacccaactgctcaattggggctgggtggtttgtccactctgcaacaagggcgtgacgag
atcgttgcacatgcaactgccttttttgtgcttggtgggaaggagcactttcgcaggtgc
agcaccgagttgcggttgatgggaatttcggaactgatttgtttcttgcatgccatcacc
gaaggaacgagcagtttcgttgataatattggaaagtcttttgaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaa

Data files

   None

Notes

   None

References

   None

Warnings

   None

Diagnostic Error Messages

   None

Exit status

   Always exits with status 0

Known bugs

   None

See also

   Program name                        Description
   banana       Bending and curvature plot in B-DNA
   btwisted     Calculates the twisting in a B-DNA sequence
   chaos        Create a chaos game representation plot for a sequence
   compseq      Count composition of dimer/trimer/etc words in a sequence
   dan          Calculates DNA RNA/DNA melting temperature
   freak        Residue/base frequency table or plot
   isochore     Plots isochores in large DNA sequences
   sirna        Finds siRNA duplexes in mRNA
   wordcount    Counts words of a specified size in a DNA sequence

Author(s)

Target users

   This program is intended to be used by everyone and everything, from
   naive users to embedded scripts.

Comments

   None