📄 showdb.txt
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qapir P OK OK OK PIRqapirall P OK OK OK PIRqapirinc P OK OK OK PIRqapxfasta P OK OK OK FASTA file swissnew entriesqapxflat P OK OK OK Swissnew flatfilesqapxflatexc P OK OK OK Swissnew flatfiles, no updated sequence fileqapxflatinc P OK OK OK Swissnew flatfiles, only updated sequence fileqaxpir P OK OK OK PIRqaxpirall P OK OK OK PIRqaxpirinc P OK OK OK PIRtpir P OK OK OK PIR using NBRF access for 4 filestsw P OK OK OK Swissprot native format with EMBL CD-ROM indextswnew P OK OK OK Swissnew as 3 files in native format with EMBL CD-ROM indextwp P OK OK OK EMBL new in native format with EMBL CD-ROM index Example 6 Display the information with no headings:% showdb -noheading Displays information on the currently available databasesqapblast P OK OK OK BLAST swissnewqapblastall P OK OK OK BLAST swissnew, all fields indexedqapblastsplit P OK OK OK BLAST swissnew split in 5 filesqapblastsplitexc P OK OK OK BLAST swissnew split in 5 files, not file 02qapblastsplitinc P OK OK OK BLAST swissnew split in 5 files, only file 02qapfasta P OK OK OK FASTA file swissnew entriesqapflat P OK OK OK Swissnew flatfilesqapflatall P OK OK OK Swissnew flatfiles, all fields indexedqapflatexc P OK OK OK Swissnew flatfiles, no updated sequence fileqapflatinc P OK OK OK Swissnew flatfiles, only updated sequence fileqapir P OK OK OK PIRqapirall P OK OK OK PIRqapirinc P OK OK OK PIRqapxfasta P OK OK OK FASTA file swissnew entriesqapxflat P OK OK OK Swissnew flatfilesqapxflatexc P OK OK OK Swissnew flatfiles, no updated sequence fileqapxflatinc P OK OK OK Swissnew flatfiles, only updated sequence fileqaxpir P OK OK OK PIRqaxpirall P OK OK OK PIRqaxpirinc P OK OK OK PIRtpir P OK OK OK PIR using NBRF access for 4 filestsw P OK OK OK Swissprot native format with EMBL CD-ROM indextswnew P OK OK OK Swissnew as 3 files in native format with EMBL CD-ROM indextwp P OK OK OK EMBL new in native format with EMBL CD-ROM indexgenbanksrs N OK - - Genbank IDsqanfasta N OK OK OK FASTA file EMBL rodentsqanfastaall N OK OK OK FASTA file EMBL rodents, all fields indexedqanflat N OK OK OK EMBL flatfilesqangcg N OK OK OK GCG format EMBLqangcgall N OK OK OK GCG format EMBLqangcgexc N OK OK OK GCG format EMBL without prokaryotesqangcginc N OK OK OK GCG format EMBL only prokaryotesqanxfasta N OK OK OK FASTA file EMBL rodentsqanxfastaall N OK OK OK FASTA file EMBL rodents, all fields indexedqanxflat N OK OK OK EMBL flatfilesqanxflatall N OK OK OK EMBL flatfiles, all fields indexedqanxgcg N OK OK OK GCG format EMBLqanxgcgall N OK OK OK GCG format EMBLqanxgcgexc N OK OK OK GCG format EMBL without prokaryotesqanxgcginc N OK OK OK GCG format EMBL only prokaryotesqapirexc N OK OK OK PIRqasrswww N OK - - Remote SRS web serverqawfasta N OK OK OK FASTA file wormpep entriesqawxfasta N OK OK OK FASTA file wormpep entriesqaxpirexc N OK OK OK PIRtembl N OK OK OK EMBL in native format with EMBL CD-ROM indextemblall N - - OK EMBL in native format with EMBL CD-ROM indextemblrest N - - OK EMBL in native format with EMBL CD-ROM indextemblvrt N - - OK EMBL in native format with EMBL CD-ROM indextgb N OK - - Genbank IDstgenbank N OK OK OK GenBank in native format with EMBL CD-ROM index Example 7 Display just a list of the available database names:% showdb -noheading -notype -noid -noquery -noall -nocomment -auto qapblastqapblastallqapblastsplitqapblastsplitexcqapblastsplitincqapfastaqapflatqapflatallqapflatexcqapflatincqapirqapirallqapirincqapxfastaqapxflatqapxflatexcqapxflatincqaxpirqaxpirallqaxpirinctpirtswtswnewtwpgenbanksrsqanfastaqanfastaallqanflatqangcgqangcgallqangcgexcqangcgincqanxfastaqanxfastaallqanxflatqanxflatallqanxgcgqanxgcgallqanxgcgexcqanxgcgincqapirexcqasrswwwqawfastaqawxfastaqaxpirexctembltemblalltemblresttemblvrttgbtgenbank Example 8 Display only the names and types:% showdb -only -type Displays information on the currently available databasesqapblast Pqapblastall Pqapblastsplit Pqapblastsplitexc Pqapblastsplitinc Pqapfasta Pqapflat Pqapflatall Pqapflatexc Pqapflatinc Pqapir Pqapirall Pqapirinc Pqapxfasta Pqapxflat Pqapxflatexc Pqapxflatinc Pqaxpir Pqaxpirall Pqaxpirinc Ptpir Ptsw Ptswnew Ptwp Pgenbanksrs Nqanfasta Nqanfastaall Nqanflat Nqangcg Nqangcgall Nqangcgexc Nqangcginc Nqanxfasta Nqanxfastaall Nqanxflat Nqanxflatall Nqanxgcg Nqanxgcgall Nqanxgcgexc Nqanxgcginc Nqapirexc Nqasrswww Nqawfasta Nqawxfasta Nqaxpirexc Ntembl Ntemblall Ntemblrest Ntemblvrt Ntgb Ntgenbank N Example 9 Display everything% showdb -full Displays information on the currently available databases# Name Type ID Qry All Method Fields Defined Release Comment# ============== ==== == === === ========= ================= ======= ======= =======qapblast P OK OK OK blast - special BLAST swissnewqapblastall P OK OK OK blast sv,des special BLAST swissnew, all fields indexedqapblastsplit P OK OK OK blast - special BLAST swissnew split in 5 filesqapblastsplitexc P OK OK OK blast - special BLAST swissnew split in 5 files, not file 02qapblastsplitinc P OK OK OK blast - special BLAST swissnew split in 5 files, only file 02qapfasta P OK OK OK emblcd - special FASTA file swissnew entriesqapflat P OK OK OK emblcd - special Swissnew flatfilesqapflatall P OK OK OK emblcd sv,des,org,key special Swissnew flatfiles, all fields indexedqapflatexc P OK OK OK emblcd - special Swissnew flatfiles, no updated sequence fileqapflatinc P OK OK OK emblcd - special Swissnew flatfiles, only updated sequence fileqapir P OK OK OK gcg - special PIRqapirall P OK OK OK gcg des,org,key special PIRqapirinc P OK OK OK gcg - special PIRqapxfasta P OK OK OK emboss - special FASTA file swissnew entriesqapxflat P OK OK OK emboss - special Swissnew flatfilesqapxflatexc P OK OK OK emboss - special Swissnew flatfiles, no updated sequence fileqapxflatinc P OK OK OK emboss - special Swissnew flatfiles, only updated sequence fileqaxpir P OK OK OK embossgcg - special PIRqaxpirall P OK OK OK embossgcg des,org,key special PIRqaxpirinc P OK OK OK embossgcg - special PIRtpir P OK OK OK gcg des,org,key special PIR using NBRF access for 4 filestsw P OK OK OK emblcd sv,des,org,key special 36 Swissprot native format with EMBL CD-ROM indextswnew P OK OK OK emblcd sv,des,org,key special 37 Swissnew as 3 files in native format with EMBL CD-ROM indextwp P OK OK OK emblcd des special 16 EMBL new in native format with EMBL CD-ROM indexgenbanksrs N OK - - srswww gi,sv,des,org,key global Genbank IDsqanfasta N OK OK OK emblcd - special FASTA file EMBL rodentsqanfastaall N OK OK OK emblcd sv,des special FASTA file EMBL rodents, all fields indexedqanflat N OK OK OK emblcd - special EMBL flatfilesqangcg N OK OK OK gcg - special GCG format EMBLqangcgall N OK OK OK gcg sv,des,org,key special GCG format EMBLqangcgexc N OK OK OK gcg - special GCG format EMBL without prokaryotesqangcginc N OK OK OK gcg - special GCG format EMBL only prokaryotesqanxfasta N OK OK OK emboss - special F⌨️ 快捷键说明
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