📄 diffseq.txt
字号:
Sequence: aFeature: repeat_region 8391-8686 rpt_family='AluSg' [Part of this file has been deleted for brevity]Sequence: tSequence: gAF129756 99726-99726 Length: 1AP000504 93860-93860 Length: 1Sequence: tSequence: gAF129756 99890-99890 Length: 1AP000504 95451-95451 Length: 1Sequence: cSequence: tAF129756 101481-101481 Length: 1AP000504 96650-96650 Length: 1Sequence: cSequence: tAF129756 102680-102680 Length: 1AP000504 97273-97274 Length: 2Sequence: aaSequence:Feature: repeat_region 103299-103402 rpt_family='AluSq'AF129756 103302 Length: 0AP000504 97716-97716 Length: 1Sequence: aSequence: gAF129756 103744-103744 Length: 1AP000504 97827-97827 Length: 1Sequence: cSequence: tFeature: repeat_region 103784-104083 rpt_family='AluSx'AF129756 103855-103855 Length: 1#---------------------------------------## Overlap_end: 100000 in AP000504# Overlap_end: 106028 in AF129756## SNP_count: 86# Transitions: 58# Transversions: 28##---------------------------------------#---------------------------------------# Total_sequences: 1# Total_hitcount: 119#--------------------------------------- File: AF129756.diffgff##gff-version 2.0##date 2006-07-15##Type DNA AF129756AF129756 diffseq conflict 6882 6882 1.000 + .Sequence "AF129756.1" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 7830 7830 1.000 + .Sequence "AF129756.2" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 8500 8500 1.000 + .Sequence "AF129756.3" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 10945 10962 1.000 + .Sequence "AF129756.4" ; note "Insertion of 18 bases in AF129756" ; replace ""AF129756 diffseq conflict 10999 11001 1.000 + .Sequence "AF129756.5" ; note "AP000504" ; replace "aaa"AF129756 diffseq conflict 12915 12915 1.000 + .Sequence "AF129756.6" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 15139 15139 1.000 + .Sequence "AF129756.7" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 17192 17192 1.000 + .Sequence "AF129756.8" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 19761 19761 1.000 + .Sequence "AF129756.9" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 20291 20291 1.000 + .Sequence "AF129756.10" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 20462 20462 1.000 + .Sequence "AF129756.11" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 25686 25686 1.000 + .Sequence "AF129756.12" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 26192 26192 1.000 + .Sequence "AF129756.13" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 27227 27227 1.000 + .Sequence "AF129756.14" ; note "Insertion of 1 bases in AF129756" ; replace ""AF129756 diffseq conflict 27837 27837 1.000 + .Sequence "AF129756.15" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 29328 29328 1.000 + .Sequence "AF129756.16" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 29458 29458 1.000 + .Sequence "AF129756.17" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 29629 29629 1.000 + .Sequence "AF129756.18" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 29646 29646 1.000 + .Sequence "AF129756.19" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 30838 30838 1.000 + .Sequence "AF129756.20" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 31349 31349 1.000 + .Sequence "AF129756.21" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 31901 31901 1.000 + .Sequence "AF129756.22" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 36682 36682 1.000 + .Sequence "AF129756.23" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 38225 38226 1.000 + .Sequence "AF129756.24" ; note "Insertion of 2 bases in AF129756" ; replace ""AF129756 diffseq conflict 38379 38379 1.000 + .Sequence "AF129756.25" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 38537 38537 1.000 + .Sequence "AF129756.26" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 39114 39114 1.000 + .Sequence "AF129756.27" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 39816 39816 1.000 + .Sequence "AF129756.28" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 40807 40807 1.000 + .Sequence "AF129756.29" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 40977 40977 1.000 + .Sequence "AF129756.30" ; note "Insertion of 1 bases in AF129756" ; replace ""AF129756 diffseq conflict 41204 41204 1.000 + .Sequence "AF129756.31" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 42548 42548 1.000 + .Sequence "AF129756.32" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 45315 45315 1.000 + .Sequence "AF129756.33" ; note "Insertion of 1 bases in AF129756" ; replace ""AF129756 diffseq conflict 48382 48382 1.000 + .Sequence "AF129756.34" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 50635 50635 1.000 + .Sequence "AF129756.35" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 50809 50809 1.000 + .Sequence "AF129756.36" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 51286 51286 1.000 + .Sequence "AF129756.37" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 51645 51645 1.000 + .Sequence "AF129756.38" ; note "Insertion of 1 bases in AF129756" ; replace ""AF129756 diffseq conflict 52388 52388 1.000 + .Sequence "AF129756.39" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 52646 52646 1.000 + .Sequence "AF129756.40" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 53596 53596 1.000 + .Sequence "AF129756.41" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 53621 53621 1.000 + .Sequence "AF129756.42" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 54883 54883 1.000 + .Sequence "AF129756.43" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 55377 55377 1.000 + .Sequence "AF129756.44" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 55571 55571 1.000 + .Sequence "AF129756.45" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 55611 55611 1.000 + .Sequence "AF129756.46" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 55655 55661 1.000 + .Sequence "AF129756.47" ; note "Insertion of 7 bases in AF129756" ; replace "" [Part of this file has been deleted for brevity]AF129756 diffseq conflict 66604 66604 1.000 + .Sequence "AF129756.55" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 69445 69445 1.000 + .Sequence "AF129756.56" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 70182 70183 1.000 + .Sequence "AF129756.57" ; note "AP000504" ; replace "ta"AF129756 diffseq conflict 70195 70195 1.000 + .Sequence "AF129756.58" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 71102 71102 1.000 + .Sequence "AF129756.59" ; note "Insertion of 1 bases in AF129756" ; replace ""AF129756 diffseq conflict 73566 73566 1.000 + .Sequence "AF129756.60" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 73758 73758 1.000 + .Sequence "AF129756.61" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 74597 74597 1.000 + .Sequence "AF129756.62" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 76175 76176 1.000 + .Sequence "AF129756.63" ; note "Insertion of 2 bases in AF129756" ; replace ""AF129756 diffseq conflict 76463 76463 1.000 + .Sequence "AF129756.64" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 76710 76710 1.000 + .Sequence "AF129756.65" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 77331 77331 1.000 + .Sequence "AF129756.66" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 77597 77597 1.000 + .Sequence "AF129756.67" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 78092 78092 1.000 + .Sequence "AF129756.68" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 79671 79671 1.000 + .Sequence "AF129756.69" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 80042 80042 1.000 + .Sequence "AF129756.70" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 80115 80115 1.000 + .Sequence "AF129756.71" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 81882 81882 1.000 + .Sequence "AF129756.72" ; note "AP000504" ; replace "tttggaat"AF129756 diffseq conflict 82132 82132 1.000 + .Sequence "AF129756.73" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 83649 83649 1.000 + .Sequence "AF129756.74" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 84290 84290 1.000 + .Sequence "AF129756.75" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 86465 86465 1.000 + .Sequence "AF129756.76" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 86842 86844 1.000 + .Sequence "AF129756.77" ; note "Insertion of 3 bases in AF129756" ; replace ""AF129756 diffseq conflict 87014 87014 1.000 + .Sequence "AF129756.78" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 87102 87102 1.000 + .Sequence "AF129756.79" ; note "Insertion of 1 bases in AF129756" ; replace ""AF129756 diffseq conflict 87605 87605 1.000 + .Sequence "AF129756.80" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 87893 87893 1.000 + .Sequence "AF129756.81" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 88359 88359 1.000 + .Sequence "AF129756.82" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 88635 88635 1.000 + .Sequence "AF129756.83" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 88750 88750 1.000 + .Sequence "AF129756.84" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 88822 88826 1.000 + .Sequence "AF129756.85" ; note "Insertion of 5 bases in AF129756" ; replace ""AF129756 diffseq conflict 89118 89118 1.000 + .Sequence "AF129756.86" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 89738 89738 1.000 + .Sequence "AF129756.87" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 91271 91271 1.000 + .Sequence "AF129756.88" ; note "Insertion of 1 bases in AF129756" ; replace ""AF129756 diffseq conflict 92311 92311 1.000 + .Sequence "AF129756.89" ; note "SNP in AP000504" ; replace "g"AF129756 diffseq conflict 92345 92345 1.000 + .Sequence "AF129756.90" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 93979 93979 1.000 + .Sequence "AF129756.91" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 94959 94959 1.000 + .Sequence "AF129756.92" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 95246 95246 1.000 + .Sequence "AF129756.93" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 95809 95810 1.000 + .Sequence "AF129756.94" ; note "AP000504" ; replace "aat"AF129756 diffseq conflict 96756 96756 1.000 + .Sequence "AF129756.95" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 97713 97713 1.000 + .Sequence "AF129756.96" ; note "AP000504" ; replace "tgtgtgtgtgtgtgtgt"AF129756 diffseq conflict 97827 97827 1.000 + .Sequence "AF129756.97" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 98195 98195 1.000 + .Sequence "AF129756.98" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 99280 99280 1.000 + .Sequence "AF129756.99" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 99726 99726 1.000 + .Sequence "AF129756.100" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 99890 99890 1.000 + .Sequence "AF129756.101" ; note "SNP in AP000504" ; replace "t"AF129756 diffseq conflict 101481 101481 1.000 + .Sequence "AF129756.102" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 102680 102680 1.000 + .Sequence "AF129756.103" ; note "SNP in AP000504" ; replace "c"AF129756 diffseq conflict 103744 103744 1.000 + .Sequence "AF129756.104" ; note "SNP in AP000504" ; replace "a"AF129756 diffseq conflict 103855 103855 1.000 + .Sequence "AF129756.105" ; note "SNP in AP000504" ; replace "c" File: AP000504.diffgff##gff-version 2.0##date 2006-07-15##Type DNA AP000504AP000504 diffseq conflict 847 847 1.000 + .Sequence "AP000504.1" ; note "SNP in AF129756" ; replace "t"AP000504 diffseq conflict 1795 1795 1.000 + .Sequence "AP000504.2" ; note "SNP in AF129756" ; replace "a"AP000504 diffseq conflict 2273 2273 1.000 + .Sequence "AP000504.3" ; note "Insertion of 1 bases in AP000504" ; replace ""AP000504 diffseq conflict 2466 2466 1.000 + .Sequence "AP000504.4" ; note "SNP in AF129756" ; replace "a"AP000504 diffseq conflict 2655 2658 1.000 + .Sequence "AP000504.5" ; note "Insertion of 4 bases in AP000504" ; replace ""AP000504 diffseq conflict 4951 4953 1.000 + .Sequence "AP000504.6" ; note "AF129756" ; replace "tat"AP000504 diffseq conflict 6600 6600 1.000 + .Sequence "AP000504.7" ; note "Insertion of 1 bases in AP000504" ; replace ""AP000504 diffseq conflict 6868 6868 1.000 + .⌨️ 快捷键说明
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