jembossrun.java

emboss的linux版本的源代码

/********************************************************************
*
*  This library is free software; you can redistribute it and/or
*  modify it under the terms of the GNU Library General Public
*  License as published by the Free Software Foundation; either
*  version 2 of the License, or (at your option) any later version.
*
*  This library is distributed in the hope that it will be useful,
*  but WITHOUT ANY WARRANTY; without even the implied warranty of
*  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
*  Library General Public License for more details.
*
*  You should have received a copy of the GNU Library General Public
*  License along with this library; if not, write to the
*  Free Software Foundation, Inc., 59 Temple Place - Suite 330,
*  Boston, MA  02111-1307, USA.
*
*  Based on EmbreoRun
*
*  @author: Copyright (C) Tim Carver
*
********************************************************************/


package org.emboss.jemboss.soap;

import java.io.*;
import java.util.*;

import org.emboss.jemboss.JembossParams;

/**
*
* Executes an application on a server
*
*/
public class JembossRun
{

  /** status message */
  private String statusmsg;
  /** status of the request */
  private String status;
  /** program result */
  private Hashtable proganswer;

  /**
  *
  * @param appl       	defining command
  * @param options    	defining options
  * @param filesToMove  Hashtable of filenames and contents
  * @param mysettings 	jemboss properties
  * @throws JembossSoapException if authentication fails
  *
  */
  public JembossRun(String appl, String options, Hashtable filesToMove, 
                    JembossParams mysettings) throws JembossSoapException 
  {

    String fulloptions;

    Vector params = new Vector();
    params.addElement(appl);

     //construct a full options string
    fulloptions = "mode="+mysettings.getCurrentMode()+" "+options;
//   if (mysettings.getUseX11()) 
//     fulloptions = "display="+mysettings.getX11display()+" "+fulloptions;
    params.addElement(fulloptions);

    // just pass the hash
    params.addElement(filesToMove);

    PrivateRequest eRun;
    try 
    {
      eRun = new PrivateRequest(mysettings,
			       "run_prog", params);
    }
    catch (JembossSoapException e)
    {
      throw new JembossSoapException("Authentication Failed");
    }

    proganswer = eRun.getHash();
    status = proganswer.get("status").toString();
    statusmsg = proganswer.get("msg").toString();
    
    proganswer.remove("status");  // delete the status/msg
    proganswer.remove("msg");
  }


  /**
  *
  * The status of the request
  * @return 	0 for success
  *
  */
  public String getStatus() 
  {
    return status;
  }
  
  /**
  *
  * A status message or description of a error
  * @return 	status message
  *
  */
  public String getStatusMsg() 
  {
    return statusmsg;
  }

  /**
  *
  * Get a Hashtable of filenames and their contents generated by
  * running the application
  * @return 	results
  *
  */
  public Hashtable hash() 
  {
    return proganswer;
  }


  /**
  *
  * Get a result from the result Hashtable
  * @param key	key into the results Hashtable
  * @return 	element in the results Hashtable
  *
  */
  public Object get(Object key) 
  {
    return proganswer.get(key);
  }

}