matrices.h

经典生物信息学多序列比对工具clustalw

 -2,  0,  0,  0,  0,  0, -2,  6,
  0,  0, -2, -3, -3,  0, -3, -3,  4,
 -1,  0, -3,  0,  1, -5, -1,  1, -3,  5,
 -1,  0, -2, -4, -4,  2, -4, -2,  2, -3,  5,
  0,  0, -2, -3, -3,  0, -3, -2,  3, -2,  3,  6,
  0,  0, -1,  2,  1, -3,  0,  1, -2,  1, -3, -2,  3,
  1,  0, -2, -2, -2, -2, -1,  0, -2, -1,  0, -2, -1,  6,
 -1,  0, -3,  0,  2, -4, -1,  3, -3,  2, -2, -2,  0,  0,  5,
 -1,  0, -1, -1,  0, -4,  0,  2, -3,  4, -3, -2,  0, -1,  2,  5,
  1,  0,  1,  0, -1, -2,  1, -1, -1, -1, -2, -1,  1,  1, -1, -1,  2,
  2,  0, -1, -1, -1, -2,  0, -1,  1, -1, -1,  0,  1,  1, -1, -1,  1,  2,
  1,  0, -2, -3, -2,  0, -2, -3,  4, -3,  2,  2, -2, -1, -3, -3, -1,  0,  4,
 -4,  0,  1, -5, -5, -1, -1, -3, -4, -3, -2, -3, -4, -4, -3,  0, -3, -4, -3, 15,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,
 -3,  0,  2, -2, -4,  5, -4,  4, -2, -3, -1, -3, -1, -3, -2, -2, -1, -3, -3,  0,  0,  9,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0};

short md_350mt[]={
  1,
  0,  0,
  0,  0,  9,
  0,  0, -2,  3,
  0,  0, -2,  3,  3,
 -2,  0,  1, -3, -4,  6,
  1,  0,  0,  1,  1, -3,  4,
 -1,  0,  0,  0,  0,  0, -1,  3,
  0,  0, -1, -2, -2,  1, -2, -2,  3,
 -1,  0, -1,  0,  1, -3,  0,  1, -2,  3,
 -1,  0, -1, -3, -3,  2, -2, -1,  2, -2,  3,
  0,  0, -1, -2, -2,  1, -2, -1,  2, -2,  2,  3,
  0,  0, -1,  1,  1, -2,  0,  1, -1,  1, -2, -1,  2,
  1,  0, -1, -1, -1, -2, -1,  0, -1, -1,  0, -1,  0,  4,
 -1,  0, -2,  1,  1, -2,  0,  2, -2,  2, -1, -1,  0,  0,  3,
 -1,  0,  0,  0,  0, -3,  0,  1, -2,  3, -2, -1,  0,  0,  2,  3,
  1,  0,  0,  0,  0, -1,  1,  0, -1,  0, -1, -1,  1,  1,  0,  0,  1,
  1,  0,  0,  0, -1, -1,  0, -1,  0,  0, -1,  0,  0,  1, -1,  0,  1,  1,
  0,  0, -1, -2, -2,  0, -1, -2,  2, -2,  1,  2, -1, -1, -2, -2,  0,  0,  2,
 -3,  0,  1, -4, -3,  0, -1, -2, -3, -2, -1, -2, -3, -3, -2,  0, -2, -3, -2, 14,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,
 -2,  0,  2, -2, -2,  5, -3,  3, -1, -2,  0, -1, -1, -2, -1, -1, -1, -2, -2,  0,  0,  7,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0};
*/

short idmat[]={
10,
 0, 10,
 0, 0, 10,
 0, 0, 0, 10,
 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,10,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,10};

short gon40mt[]={
  92,
   0,   0,
 -31,   0, 163,
 -56,   0,-135, 111,
 -37,   0,-140,  16, 105,
 -92,   0, -64,-152,-143, 126,
 -32,   0, -91, -51, -76,-152, 105,
 -65,   0, -67, -41, -40, -50, -81, 145,
 -76,   0, -87,-150,-106, -39,-158, -94, 104,
 -54,   0,-132, -47, -13,-127, -79, -34, -86, 103,
 -68,   0, -85,-155,-108, -13,-141, -85,   5, -85,  89,
 -45,   0, -63,-130, -80, -16,-114, -60,  10, -57,  16, 140,
 -62,   0, -83,   6, -38,-104, -40,  -7, -99, -20,-112, -91, 115,
 -37,   0,-137, -69, -60,-128, -87, -71,-108, -62, -83,-119, -78, 124,
 -43,   0,-113, -32,  10,-100, -71,   0, -91,   2, -60, -35, -25, -46, 118,
 -61,   0, -86, -77, -50,-130, -69, -31,-103,  19, -84, -81, -47, -73,  -6, 112,
   0,   0, -35, -36, -41,-111, -37, -48, -95, -43, -95, -64, -11, -35, -35, -51,  99,
 -25,   0, -59, -47, -52, -90, -85, -46, -51, -34, -78, -44, -27, -42, -39, -52,  13, 100,
 -22,   0, -43,-133, -74, -58,-122, -98,  28, -82, -18, -22,-103, -86, -79, -88, -74, -25,  97,
-120,   0, -68,-171,-131,  -6,-108, -70, -93,-127, -71, -72,-119,-149, -87, -63, -98,-120,-115, 181,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,
 -95,   0, -56, -98,-107,  31,-129,   5, -76, -88, -64, -66, -62,-106, -81, -75, -69, -87, -73,   1,   0, 135,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0};

short gon80mt[]={
  75,
   0,   0,
 -10,   0, 154,
 -31,   0, -93,  96,
 -17,   0, -94,  31,  88,
 -64,   0, -39,-111,-102, 114,
 -11,   0, -61, -26, -47,-115,  97,
 -39,   0, -43, -17, -17, -26, -53, 127,
 -43,   0, -54,-106, -73, -15,-114, -64,  86,
 -30,   0, -88, -21,   4, -89, -50, -12, -59,  85,
 -43,   0, -55,-109, -75,   7,-104, -57,  22, -58,  77,
 -26,   0, -39, -88, -53,   3, -83, -38,  25, -37,  31, 117,
 -34,   0, -55,  21, -13, -75, -18,   9, -71,  -2, -79, -62,  97,
 -16,   0, -93, -42, -35, -93, -58, -45, -75, -37, -58, -78, -48, 114,
 -22,   0, -76,  -9,  23, -70, -44,  14, -60,  17, -39, -19,  -6, -24,  95,
 -36,   0, -60, -44, -23, -90, -43, -10, -71,  33, -58, -53, -22, -45,  11,  97,
  14,   0, -15, -14, -19, -77, -16, -25, -62, -20, -64, -41,   5, -14, -15, -27,  78,
  -5,   0, -34, -24, -27, -62, -52, -24, -28, -15, -49, -25,  -7, -20, -18, -27,  25,  81,
  -6,   0, -21, -89, -51, -31, -86, -65,  41, -54,   3,   1, -69, -57, -51, -60, -43,  -9,  80,
 -87,   0, -43,-124, -98,  16, -81, -43, -63, -89, -44, -45, -86,-112, -62, -41, -72, -87, -80, 173,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,
 -65,   0, -32, -69, -74,  49, -94,  21, -47, -60, -35, -37, -39, -76, -53, -50, -46, -58, -47,  23,   0, 123,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0};

short gon120mt[]={
  59,
   0,   0,
  -1,   0, 144,
 -18,   0, -69,  82,
  -9,   0, -68,  35,  72,
 -48,   0, -26, -87, -78, 102,
  -3,   0, -45, -14, -31, -92,  90,
 -26,   0, -31,  -7,  -6, -14, -37, 110,
 -27,   0, -36, -80, -55,  -3, -87, -48,  72,
 -19,   0, -64,  -8,  11, -67, -34,  -2, -44,  69,
 -30,   0, -39, -82, -57,  15, -82, -42,  28, -44,  66,
 -17,   0, -26, -64, -40,  11, -65, -28,  29, -27,  34,  95,
 -20,   0, -41,  26,  -1, -58,  -7,  14, -55,   5, -61, -46,  80,
  -6,   0, -68, -28, -22, -72, -41, -31, -56, -24, -44, -56, -32, 105,
 -12,   0, -56,   1,  25, -53, -30,  17, -43,  20, -30, -14,   1, -14,  74,
 -23,   0, -45, -27, -10, -68, -30,  -1, -53,  36, -44, -38, -10, -30,  16,  83,
  16,   0,  -7,  -5,  -9, -58,  -6, -14, -44, -10, -47, -29,  10,  -5,  -7, -15,  60,
   2,   0, -21, -13, -15, -47, -35, -14, -17,  -6, -34, -16,   0, -10,  -9, -16,  26,  64,
   0,   0, -11, -65, -38, -17, -65, -47,  42, -39,  13,  10, -50, -42, -36, -44, -28,  -3,  65,
 -68,   0, -29, -96, -78,  27, -66, -28, -46, -68, -29, -31, -68, -89, -49, -30, -57, -67, -59, 166,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,
 -48,   0, -20, -53, -56,  55, -74,  26, -31, -44, -20, -22, -28, -59, -38, -37, -35, -42, -33,  33,   0, 111,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0};

short gon160mt[]={
  46,
   0,   0,
   3,   0, 135,
 -11,   0, -53,  70,
  -4,   0, -52,  34,  59,
 -38,   0, -18, -70, -62,  91,
   2,   0, -34,  -7, -21, -76,  82,
 -18,   0, -23,  -1,  -1,  -7, -27,  93,
 -18,   0, -25, -62, -43,   3, -70, -37,  59,
 -12,   0, -48,  -1,  13, -53, -24,   2, -35,  55,
 -22,   0, -29, -65, -45,  19, -67, -32,  30, -34,  57,
 -12,   0, -19, -50, -31,  14, -52, -21,  29, -21,  34,  76,
 -12,   0, -31,  26,   5, -47,  -2,  15, -44,   8, -48, -36,  65,
  -1,   0, -52, -19, -14, -58, -30, -22, -43, -16, -35, -42, -22,  96,
  -7,   0, -42,   6,  23, -41, -21,  17, -32,  20, -24, -12,   5,  -8,  56,
 -16,   0, -35, -16,  -3, -53, -21,   3, -41,  35, -35, -29,  -4, -21,  17,  71,
  16,   0,  -2,   0,  -3, -45,  -1,  -8, -33,  -4, -36, -23,  11,   0,  -2,  -9,  44,
   5,   0, -14,  -6,  -8, -36, -24,  -8, -12,  -2, -24, -11,   3,  -4,  -4,  -9,  23,  50,
   1,   0,  -6, -49, -30,  -8, -52, -35,  40, -30,  17,  14, -38, -32, -27, -34, -20,   0,  53,
 -55,   0, -21, -78, -64,  32, -55, -19, -34, -54, -20, -22, -55, -74, -40, -24, -47, -54, -45, 158,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,
 -37,   0, -13, -42, -44,  56, -60,  27, -20, -35, -11, -13, -22, -48, -29, -29, -28, -32, -24,  38,   0, 100,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0};

short gon250mt[]={
  24,
   0,   0,
   5,   0, 115,
  -3,   0, -32,  47,
   0,   0, -30,  27,  36,
 -23,   0,  -8, -45, -39,  70,
   5,   0, -20,   1,  -8, -52,  66,
  -8,   0, -13,   4,   4,  -1, -14,  60,
  -8,   0, -11, -38, -27,  10, -45, -22,  40,
  -4,   0, -28,   5,  12, -33, -11,   6, -21,  32,
 -12,   0, -15, -40, -28,  20, -44, -19,  28, -21,  40,
  -7,   0,  -9, -30, -20,  16, -35, -13,  25, -14,  28,  43,
  -3,   0, -18,  22,   9, -31,   4,  12, -28,   8, -30, -22,  38,
   3,   0, -31,  -7,  -5, -38, -16, -11, -26,  -6, -23, -24,  -9,  76,
  -2,   0, -24,   9,  17, -26, -10,  12, -19,  15, -16, -10,   7,  -2,  27,
  -6,   0, -22,  -3,   4, -32, -10,   6, -24,  27, -22, -17,   3,  -9,  15,  47,
  11,   0,   1,   5,   2, -28,   4,  -2, -18,   1, -21, -14,   9,   4,   2,  -2,  22,
   6,   0,  -5,   0,  -1, -22, -11,  -3,  -6,   1, -13,  -6,   5,   1,   0,  -2,  15,  25,
   1,   0,   0, -29, -19,   1, -33, -20,  31, -17,  18,  16, -22, -18, -15, -20, -10,   0,  34,
 -36,   0, -10, -52, -43,  36, -40,  -8, -18, -35,  -7, -10, -36, -50, -27, -16, -33, -35, -26, 142,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,
 -22,   0,  -5, -28, -27,  51, -40,  22,  -7, -21,   0,  -2, -14, -31, -17, -18, -19, -19, -11,  41,   0,  78,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0};

short gon300mt[]={
  16,
   0,   0,
   5,   0, 104,
  -1,   0, -24,  37,
   1,   0, -23,  23,  27,
 -18,   0,  -5, -37, -31,  60,
   5,   0, -15,   3,  -4, -42,  58,
  -6,   0, -10,   5,   4,   0, -10,  45,
  -6,   0,  -7, -30, -21,  11, -36, -16,  33,
  -2,   0, -21,   6,  11, -26,  -7,   5, -17,  24,
  -9,   0, -10, -32, -22,  19, -36, -14,  25, -17,  33,
  -5,   0,  -6, -24, -16,  15, -28, -10,  22, -11,  24,  31,
  -1,   0, -14,  18,   9, -25,   5,  10, -22,   8, -24, -17,  27,
   3,   0, -23,  -4,  -2, -30, -11,  -8, -20,  -3, -18, -19,  -6,  66,
  -1,   0, -18,   9,  14, -20,  -6,   9, -15,  13, -13,  -8,   7,  -1,  18,
  -4,   0, -17,   0,   5, -25,  -6,   6, -19,  22, -18, -13,   4,  -6,  13,  37,
   8,   0,   1,   5,   3, -22,   4,  -1, -14,   2, -17, -11,   7,   4,   2,   0,  15,
   5,   0,  -3,   1,   1, -17,  -7,  -1,  -4,   2,  -9,  -5,   4,   2,   1,  -1,  11,  17,
   0,   0,   1, -23, -15,   4, -26, -15,  26, -13,  17,  15, -17, -14, -12, -15,  -8,   0,  26,
 -29,   0,  -7, -42, -36,  36, -34,  -5, -13, -28,  -4,  -6, -30, -41, -23, -14, -27, -28, -19, 132,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,
 -17,   0,  -3, -22, -22,  46, -33,  18,  -3, -17,   3,   1, -12, -25, -14, -14, -15, -15,  -7,  40,   0,  67,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0};

short gon350mt[]={
  10,
   0,   0,
   4,   0,  93,
   0,   0, -19,  29,
   1,   0, -17,  19,  20,
 -14,   0,  -3, -30, -25,  51,
   5,   0, -12,   4,  -2, -35,  51,
  -4,   0,  -8,   5,   4,   1,  -7,  33,
  -4,   0,  -5, -24, -17,  11, -29, -13,  27,
  -1,   0, -16,   6,   9, -21,  -4,   5, -13,  18,
  -7,   0,  -7, -25, -18,  18, -30, -11,  22, -14,  28,
  -4,   0,  -4, -19, -13,  14, -23,  -8,  19,  -9,  21,  23,
   0,   0, -11,  15,   9, -20,   5,   8, -18,   7, -19, -14,  20,
   3,   0, -18,  -2,   0, -25,  -7,  -5, -16,  -2, -15, -14,  -3,  56,
   0,   0, -14,   8,  11, -16,  -4,   7, -11,  10, -11,  -7,   6,   0,  12,
  -2,   0, -13,   2,   6, -20,  -4,   6, -15,  18, -14, -11,   4,  -4,  10,  28,
   6,   0,   1,   5,   3, -18,   5,   0, -11,   2, -13,  -9,   6,   4,   2,   1,  10,
   4,   0,  -2,   2,   1, -13,  -5,  -1,  -3,   2,  -7,  -4,   4,   2,   1,   0,   8,  11,
   0,   0,   2, -18, -12,   5, -21, -11,  22, -10,  16,  14, -13, -11,  -9, -12,  -6,   0,  21,
 -24,   0,  -4, -35, -29,  35, -30,  -3,  -9, -23,  -1,  -3, -24, -34, -19, -12, -22, -23, -14, 124,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,
 -14,   0,  -1, -18, -17,  42, -27,  15,  -1, -14,   5,   2, -10, -20, -11, -12, -12, -12,  -4,  39,   0,  57,
   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0,   0};


char *nucleic_acid_order = "ABCDGHKMNRSTUVWXY";
 
short clustalvdnamt[]={
 10,
  0,  0,
  0,  0, 10,
  0,  0,  0,  0,
  0,  0,  0,  0, 10,
  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 10,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 10,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,
  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0};

short swgapdnamt[]={
 10,
 -9, 10,
 -9, 10, 10,
 10, 10, -9, 10,
 -9, 10, -9, 10, 10,
 10, 10, 10, 10, -9, 10,
 -9, 10, -9, 10, 10, 10, 10,
 10, 10, 10, 10, -9, 10, -9, 10,
 10, 10, 10, 10, 10, 10, 10, 10, 10,
 10, 10, -9, 10, 10, 10, 10, 10, 10, 10,
 -9, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
 -9, 10, -9, 10, -9, 10, 10, -9, 10, -9, -9, 10,
 -9, 10, -9, 10, -9, 10, 10, -9, 10, -9, -9, 10, 10,
 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, -9, -9, 10,
 10, 10, -9, 10, -9, 10, 10, 10, 10, 10, -9, 10, 10, 10, 10,
 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
 -9, 10, 10, 10, -9, 10, 10, 10, 10, -9, 10, 10, 10, 10, 10, 10, 10};