ab046566(embl).txt

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ID   AB046566; SV 2; linear; genomic DNA; STD; MAM; 5318 BP.
XX
AC   AB046566; AB046561-AB046565;
XX
DT   06-JUN-2001 (Rel. 68, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Callithrix jacchus gene for P539 cone opsin, complete cds.
XX
KW   .
XX
OS   Callithrix jacchus (white-tufted-ear marmoset)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae;
OC   Callitrichinae; Callithrix.
XX
RN   [1]
RP   1-5318
RA   Kawamura S.;
RT   ;
RL   Submitted (25-JUL-2000) to the EMBL/GenBank/DDBJ databases.
RL   Shoji Kawamura, The University of Tokyo, Dept. Integrated Biosciences,
RL   Grad. Sch. Frontier Sciences; Seimeitou 502, 5-1-5 Kashiwanoha, Kashiwa,
RL   Chiba, 277-8562, Japan (E-mail:[e-mail],
RL   Tel:[phone], Fax:[phone])
XX
RN   [2]
RX   DOI; 10.1016/S0378-1119(01)00454-1.
RX   PUBMED; 11376936.
RA   Kawamura S., Hirai M., Takenaka O., Radlwimmer B., Yokoyama S.;
RT   "Genomic and spectral analyses of long to middle wavelength-sensitive
RT   visual pigments of common marmoset (Callithrix jacchus)";
RL   Gene 269(1-2):45-51(2001).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..5318
FT                   /organism="Callithrix jacchus"
FT                   /chromosome="X"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="lambda EMBL3 genomic library"
FT                   /clone="CJ4"
FT                   /cell_type="leokocyte"
FT                   /tissue_type="blood"
FT                   /db_xref="taxon:9483"
FT   CDS             join(85..196,1051..1347,2377..2545,3388..3553,4435..4674,
FT                   5024..5134)
FT                   /codon_start=1
FT                   /product="P539 cone opsin"
FT                   /db_xref="GOA:Q9TSH4"
FT                   /db_xref="HSSP:P02699"
FT                   /db_xref="InterPro:IPR000276"
FT                   /db_xref="InterPro:IPR000378"
FT                   /db_xref="InterPro:IPR001760"
FT                   /db_xref="InterPro:IPR013032"
FT                   /db_xref="UniProtKB/TrEMBL:Q9TSH4"
FT                   /protein_id="BAB58968.1"
FT                   /translation="MAQQWSLQRLAGRHPQDNYEDSTQSSIFIYTNSNSTRGPFEGPNY
FT                   HIAPRWVYHLTSVWMLFVVVASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETV
FT                   IASTISVVNQIYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVR
FT                   FDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
FT                   LMITCCILPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMIVAYCVCW
FT                   GPYAFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLFGKK
FT                   VDDGSELSSASKTEVSSVSSVSPA"
FT   exon            85..196
FT                   /product="P539 cone opsin"
FT                   /number=1
FT   intron          197..>388
FT                   /number=1
FT   gap             399..498
FT                   /estimated_length=unknown
FT   intron          <499..1050
FT                   /number=1
FT   exon            1051..1347
FT                   /product="P539 cone opsin"
FT                   /number=2
FT   intron          1348..>1934
FT                   /number=2
FT   gap             1935..2034
FT                   /estimated_length=unknown
FT   intron          <2035..2376
FT                   /number=2
FT   exon            2377..2545
FT                   /product="P539 cone opsin"
FT                   /number=3
FT   intron          2546..>2881
FT                   /number=3
FT   gap             2882..2981
FT                   /estimated_length=unknown
FT   intron          <2982..3387
FT                   /number=3
FT   exon            3388..3553
FT                   /product="P539 cone opsin"
FT                   /number=4
FT   intron          3554..>3602
FT                   /number=4
FT   gap             3603..3702
FT                   /estimated_length=unknown
FT   intron          <3703..4434
FT                   /number=4
FT   exon            4435..4674
FT                   /product="P539 cone opsin"
FT                   /number=5
FT   intron          4675..>4730
FT                   /number=5
FT   gap             4731..4830
FT                   /estimated_length=unknown
FT   intron          <4831..5023
FT                   /number=5
FT   exon            5024..5134
FT                   /product="P539 cone opsin"
FT                   /number=6
FT   polyA_signal    5210..5215
FT                   /note="putative"
XX
SQ   Sequence 5318 BP; 1051 A; 1403 C; 1304 G; 1054 T; 506 other;
     gatcccacag gctggtataa gtgctgtgac gctcaggtga ccagccaagg gtggctgccg        60
     tcggggacag ggctttccat agccatggcc cagcagtgga gcctccagag gctcgcaggc       120
     cggcatccgc aggacaacta tgaggacagc acccagtcca gcatcttcat ctacaccaac       180
     agcaactcca ccagaggtga gccacaggcc catggaggcc acccacctgc cccgcccaag       240
     ggaatctctc ctcttcacgt ccccaccagc agagaagacc ttctccctta gcttttctga       300
     tgacatgaat ggggggtcct ctccgaatct agaaggatac cacaagatcg agtatgcatt       360
     ctccagccac acaggcttcc cagccccctt gtggatccnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnga attcatgggg ggcacncnca ttcagatcat catgaatgnt       540
     aaatgtgaca ngangtgaca gaggtgggtg gtggtcctcc ccctcaaggg ggtgagttgc       600
     cagtagctgg ggaatatgga aaggtttctg gaaggcaaag ccatctgagc tggtctttcc       660
     atgaggaaag tgtttgtcta tggaagggca gaggactctg gaagataggc tggggcgaag       720
     ggaaggggag cagggaagca gggtgactct gcacaccagg agtggggaat cagatggggg       780
     agatgatgag gagttctgtt aaggtccagg tgctagtgca gtgaccggca ggcgatggcc       840
     tctggtttga gggacaagat ggagggcagg ctgtctgagg atgggcaaag ctggagggac       900
     agagccgatt gcaaaggcaa gggcagtggg caggagaggg ggaggggaag ggggaggccc       960
     tgatggaacc gggagaggtg ggatcagcac cggtgtagac aggtgttact gccatccagc      1020
     tcctctctct cctctgcctc ctgcccgcag gccccttcga aggccccaat taccacatcg      1080
     ctcccagatg ggtgtaccac ctcaccagtg tctggatgct cttcgtggtc gtcgcatccg      1140
     tcttcacgaa tgggctggtg ctggcggcca ccatgaagtt caagaagctt cgccaccctc      1200
     tgaactggat cctggtgaac ctggcggtcg ctgacctggc agagaccgtc atcgccagca      1260
     ctatcagcgt cgtgaaccag atctatggct acttcgtgct gggccacccg atgtgtgtcc      1320
     tggagggcta caccgtctcc ctgtgtggta agccagttgg ggcccaggct cagtggaaac      1380
     cattcactca ccctgcgagc ccctccggcc accccaggat gacctgggcc cagtttctcc      1440
     catggtagat tgccaacatc tcgttgtatc atcacatgta gaaagagaac tagagagagc      1500
     tctagggact gttttttttt ttaagtttta attaaaaaaa ttaaatgtgg gggtctgcct      1560
     cccccacatc catatactga agggtttgga ggcttccatc tgaacaggca catgaagttc      1620
     agttccctca agcccagcac accctgagtt cccactcttg agtcaggctc tgcccaggga      1680
     cagccagttt gggctgtgga gctggtatga ggggagacag acacagagcc agacactctc      1740
     agaacagcat gggagcgggg cctctgggca ccctgggcag agtttccgtg caatcaagga      1800
     tgccgccctt ccagctcacc cgcatctgct tttccttggg gagacacaat tcccagatcc      1860
     tctccccatc cccatcactc atatctctgt ggccatgatt atgcttaggt cagcgacagt      1920
     ggccaagagg taccnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1980
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngagctc      2040
     aaagctcctg ctccagaagg agagcaattg aggctaagag gaaagaaaga aacggagagg      2100
     agaggaggaa agcaggggtc agtggggaag caaggtggga gaagaggcag aatgagatgc      2160
     ggaaggaagt ggaaagcagg agtcagggaa actgacccag aggcccgctc gccctggacc      2220
     tgaaaacatt cttcggagaa tgaggttttg cagctaggtg gacagacacc tcctgatttt      2280
     gaaagctgtc agctggtccg ggaaggaagc agtgaggtcg gaggctgttc cacctctgct      2340
     tctgctcaaa gccctcgtct gtctgctctc ccctagggat cacgggtctc tggtccctgg      2400
     ccatcatttc ctgggagagg tggctggttg tctgcaagcc ctttggcaat gtgagatttg      2460
     atgccaagct ggccattgtg ggcattgcct tctcctggat ctgggctgct gtgtggacag      2520
     ccccgcccat ctttggttgg agcaggtaag ggagcaaggg tgcaagacgg ggtgggcagg      2580
     gtcagactct gtgaccttga ggcaaatcat tcctttctct gggcccctct cagcgtgcaa      2640
     tgtctatgaa tgtatgaatc tggctctgtg gtccccaaac ctctggaaac atatttctcc      2700
     caagcatatt cgggtcacag gagcacatgg agaaatgcca gtgagcttgg gccatgagca      2760
     gagctgtcgg cgagcgcgca gcacgtttgc attccacgcc tgtttcctgc acatgtcaca      2820
     gcagccccct cgcctttcgg aggctgcttg catcatagat ccacctgggc ctgcagagct      2880
     cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2940
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntgggctcaa ggagtcctnc      3000
     cgcctcaacc tcccaacgtg ctgggatagg tgtgagccat tgtgcctggc ctataatggc      3060
     acattttatg ttatgtgtat tttaccacaa ttttaaaaag aggagaggca tgtcatctaa      3120
     aaaaaaaatg gataaggatt taccaaaaac ccaacagttt ccttctgcgg tgatgagaat      3180
     gttctggaag cagtgatggt gactacacag cattgggaat ggaccattcc acagaattga      3240
     tcacttcaaa ttgagtaatc tcatgcaacg tgaatttcac ctcaatttaa aaaaacaaac      3300
     cccacccgag tcaagggagg caagctgggc tgagggtcct gggccaccac accctgcatc      3360
     aggactggct gcggcccttc tctccaggta ctggccccat ggcctgaaga cttcctgcgg      3420
     cccagatgtg ttcagtggca gctcgtaccc cggggtgcag tcttacatga tcgtcctcat      3480
     gatcacatgc tgtatcctcc cactcagcat cattgtgctc tgctatctcc aagtgtggct      3540
     ggccatccga gcagtaagtg ccccagtccc tcctggcttc accccctcct gcccctaagc      3600
     ttnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggtaccca agcatggctt      3720
     gggctgcatt agtctgggct ggaggagccc cagctccagt atgtggcccc agccctgccg      3780
     gcccggccct ccccagattc cagccctcac agtccctcct ctctcatccc cactcacctg      3840
     cgtgcctctg tgacctcccc aacagcgcct ctgcctggag gccattcgtc ttcttcctcc      3900
     cctcaggcat gaaggaacca tcccaccaca gctgccctca gctgcctcgc catgagtccg      3960
     gggcaggatt tagtccacag agtggccagc ctggcctagg aagcctgagg gaagtgtatg      4020
     cattgctctg gaactgccat caggcaccca ccccaccagc cactgctctc gcctcccccg      4080
     ccaactccat cttgtttgct ccctcatact ccactcccag agatcagttc aggcctccat      4140
     gtcaggcctg ggtgcagaag aggacggtcc gttaaggaat caggtgaagc aaaggagctt      4200
     gtttggtcca gctctggggt caccttaggc caggcctagc tgcgtgccac ctccaattca      4260
     agaagaagtc ccccagggcc agcccgaggc tgccgtgtct ccctgagacc ctgtgctcga      4320
     ctcagggctg gaagctggct gctgggctcc tctccttccc acaactccct atgcctgggt      4380
     cacctgcctc ttgctgtccc tcaacccccg actcactgtc cctgtctccc tcaggtggca      4440
     aagcagcaga aagagtccga atccacccag aaggcagaga aggaagtgac gcgcatggtg      4500
     gtggtgatga tcgtggcgta ctgcgtctgc tggggaccct acgccttctt cgcatgcttt      4560
     gctgctgcca accctggcta cgccttccac cctctgatgg ctgccctgcc agcctacttt      4620
     gccaaaagtg ccactatcta caaccccatt atctatgtct ttatgaaccg gcaggtaagc      4680
     aacaccatca gcagatccca ctgaaaacgc tgtctgacct agaaggatcc nnnnnnnnnn      4740
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      4800
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ggtccaccct actcccgtgt gacctgtctt      4860
     aacctgaaca catcttttgg gggacacact tcaacctagt gtagtcacca tcaactgcta      4920
     agtcggatga cttagacagc catccccgca tgtgagggag aagtaacccg agccttcctc      4980
     catccccttc tccgctctgc tcaatcactt tctgtccttc cagtttcgaa actgcatctt      5040
     gcagcttttt gggaagaagg ttgacgatgg ctctgaactc tccagcgcat ccaaaacaga      5100
     ggtgtcatct gtgtcctcgg tgtcacctgc atgaggtctg cctcctaccc gtcccaccca      5160
     ccggggcttt ggccagctct cccttacccc tccttctcca tcccggtgaa ataaatgtaa      5220
     tttatctttg ccaaaaccaa caaagtcgca gaggctttca ctgcagtttg gggccgcctg      5280
     agcctctgag tgtgcaggca ctgcatctcg agagagcg                              5318
//