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<?xml version="1.0" encoding="iso-8859-1"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"><head> <title>netconv.cytoscape</title> <link rel="stylesheet" href="epydoc.css" type="text/css"></link></head><body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"><!-- =========== START OF NAVBAR =========== --><table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="center"> <th class="navbar"> <a class="navbar" href="netconv-module.html">Home</a> </th> <th class="navbar"> <a class="navbar" href="trees.html">Trees</a> </th> <th class="navbar"> <a class="navbar" href="indices.html">Index</a> </th> <th class="navbar"> <a class="navbar" href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr></table><table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <font size="-1"><b class="breadcrumbs"> <a href="netconv-module.html">Package netconv</a> :: Module cytoscape </b></font></br> </td> <td><table cellpadding="0" cellspacing="0"> <tr><td align="right"><font size="-2">[show private | <a href="../public/netconv.cytoscape-module.html">hide private</a>]</font></td></tr> <tr><td align="right"><font size="-2">[<a href="frames.html"target="_top">frames</a> | <a href="netconv.cytoscape-module.html" target="_top">no frames</a>]</font></td></tr> </table></td></tr></table><!-- =========== START OF MODULE DESCRIPTION =========== --><h2 class="module">Module netconv.cytoscape</h2>Functions to work with Cytoscape files<hr/><p><b>Author:</b> Marcio Rosa da Silva</p><p><b>Contact:</b> mrs@gbf.de</p><p><b>Organization:</b> Systems Biology Group / GBF</p><p><b>License:</b> GPL</p><!-- =========== START OF FUNCTION SUMMARY =========== --><table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"><tr bgcolor="#70b0f0" class="summary"> <th colspan="2">Function Summary</th></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.cytoscape-module.html#exportCyAttributes" class="summary-sig-name"><code>exportCyAttributes</code></a>(<span class=summary-sig-arg>obj</span>, <span class=summary-sig-arg>filename</span>, <span class=summary-sig-arg>attrname</span>, <span class=summary-sig-arg>s</span>)</span></code><br />Exports attributes to a Cytoscape's attributes file</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.cytoscape-module.html#exportSIF" class="summary-sig-name"><code>exportSIF</code></a>(<span class=summary-sig-arg>obj</span>, <span class=summary-sig-arg>filename</span>, <span class=summary-sig-arg>connector</span>)</span></code><br />Exports network to Cytoscape's .sif file</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.cytoscape-module.html#importCyAttributes" class="summary-sig-name"><code>importCyAttributes</code></a>(<span class=summary-sig-arg>obj</span>, <span class=summary-sig-arg>filename</span>, <span class=summary-sig-arg>attr</span>)</span></code><br />Imports attributes from a Cytoscape's attributes file</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.cytoscape-module.html#importSIF" class="summary-sig-name"><code>importSIF</code></a>(<span class=summary-sig-arg>obj</span>, <span class=summary-sig-arg>filename</span>, <span class=summary-sig-arg>filterLink</span>)</span></code><br />Imports network from Cytoscape's .sif file</td></tr></table><br /><!-- =========== START OF FUNCTION DETAILS =========== --><table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"><tr bgcolor="#70b0f0" class="details"> <th colspan="2">Function Details</th></tr></table><a name="exportCyAttributes"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">exportCyAttributes</span>(<span class=sig-arg>obj</span>, <span class=sig-arg>filename</span>=<span class=sig-default>'-'</span>, <span class=sig-arg>attrname</span>=<span class=sig-default>('cluster', 'cluster')</span>, <span class=sig-arg>s</span>=<span class=sig-default>''</span>)</span> </h3> Exports attributes to a Cytoscape's attributes file <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>obj</b></code> - network <dd><code><b>filename</b></code> - file to export <dd><code><b>attrname</b></code> - attribute to write as header of Cytoscape's attributes file </dd> </dl> </dd></dl></td></tr></table><a name="exportSIF"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">exportSIF</span>(<span class=sig-arg>obj</span>, <span class=sig-arg>filename</span>=<span class=sig-default>'-'</span>, <span class=sig-arg>connector</span>=<span class=sig-default>'pp'</span>)</span> </h3> Exports network to Cytoscape's .sif file <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>obj</b></code> - network <dd><code><b>filename</b></code> - .sif file <dd><code><b>connector</b></code> - type of relation between nodes (see Cytoscape manual section of SIF file format) </dd> </dl> </dd></dl></td></tr></table><a name="importCyAttributes"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">importCyAttributes</span>(<span class=sig-arg>obj</span>, <span class=sig-arg>filename</span>=<span class=sig-default>'-'</span>, <span class=sig-arg>attr</span>=<span class=sig-default>None</span>)</span> </h3> Imports attributes from a Cytoscape's attributes file <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>obj</b></code> - network <dd><code><b>filename</b></code> - attributes file </dd> </dl> </dd></dl></td></tr></table><a name="importSIF"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">importSIF</span>(<span class=sig-arg>obj</span>, <span class=sig-arg>filename</span>=<span class=sig-default>'-'</span>, <span class=sig-arg>filterLink</span>=<span class=sig-default>None</span>)</span> </h3> Imports network from Cytoscape's .sif file <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>obj</b></code> - network <dd><code><b>filename</b></code> - .sif file <dd><code><b>filterLink</b></code> - import only specified links (column 2 of .SIF file) </dd> </dl> </dd></dl></td></tr></table><br /><!-- =========== START OF NAVBAR =========== --><table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="center"> <th class="navbar"> <a class="navbar" href="netconv-module.html">Home</a> </th> <th class="navbar"> <a class="navbar" href="trees.html">Trees</a> </th> <th class="navbar"> <a class="navbar" href="indices.html">Index</a> </th> <th class="navbar"> <a class="navbar" href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr></table><table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr> <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 30 11:04:16 2005</font></td> <td align="right"><a href="http://epydoc.sourceforge.net" ><font size="-2">http://epydoc.sf.net</font></a></td> </tr></table></body></html>⌨️ 快捷键说明
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