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<HTML><HEAD></HEAD><BODY> <H1> GENOME EXPLORER </H1> <P> Genome Explorer is a Java front end to many useful bioinformatics tools. It provides a single interface from which these tools can be accessed and automates a lot of 'behind-the-scenes' processes. It is provided as an executable jar file. </P> <P> Genome Explorer interfaces to: <BR> <UL> <LI>ncbi-blast</LI> <LI>clustalw</LI> <LI>several phylip programs</LI> <LI>chromtree</LI> <LI>treeview</LI> </UL> It provides additional functionality for searching sequence data (for particular groups of nucleotides or amino acids) and editing multiple sequence alignments. </P> <P> Genome Explorer was developed for Windows and requires Java 1.4.1 and biojava-1.21.<BR> Installation instructions are <A HREF="genexp.readme">here</A>. <BR> To download Genome Explorer go to the <A HREF=http://jic-bioinfo.bbsrc.ac.uk/bioinformatics-research/software/Genome_Explorer/index.html> JIC bioinformatics software </A> page and select genexp.jar<BR> <P> To download Java 1.4.1 - go to the <A HREF="http://java.sun.com/j2se/1.4.1/download.html"> download page </A> and select a Windows JRE. </P> <P> To download biojava-1.21 - go to the <A HREF="http://biojava.org/download/binaries/"> binaries download page </A> and select biojava-1.21.jar, xcerces.jar, bytecode-0.91.jar, and jakarta-regexp.jar. </P> <P> To download ncbi-blast - go to the <A HREF="ftp://ftp.ncbi.nih.gov/blast/executables/"> executables download page </A> and select blastz.exe. </P> <P> To download Clustalw1.81 - go to the <A HREF="http://www.es.embnet.org/Services/ftp/software/ebi/dos/clustalw/"> clustalw download site </A> and select clustalw1.81.DOS.zip. </P> <P> To download phylip3.6a - go to the <A HREF="http://evolution.genetics.washington.edu/phylip/phylip36.html"> download page </A> and select the windows executables (parts 1 and 2) and the documentation. </P> </P> To download Treeview - go to the <A HREF="http://taxonomy.zoology.gla.ac.uk/rod/treeview.html"> treeview homepage </A> and select the Win32 version of treeview. </P> <P></BODY></HTML>⌨️ 快捷键说明
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