comparefasta.txt

比对算法的具体应用DNA序列分析 ——基因序列 ——基因表达调控信息 寻找基因牵涉到两个方面的工作 ： 识别与基因相关的特殊序列信号 预测基因的编码区域 结合两个方面的结果确定基因的位置和结构 基因表

***  GENOME EXPLORER HELP FILE  ***

To provide help on using the GUI, and information about how the programs run

Contents

1)  Outline of Function
2)  Parameters loaded from the .inf file (settings menu)
3)  The User Interface
4)  Underlying Method


---  COMPARE FASTA FILES ---

---  1)  Outline of Function ---

Compares all the sequences in one fasta file with those in the other.

All sequences that are common to both files (based on the description line) 
can be written to an outfile, and / or sequences unique to either file
can be written to outfiles.  A summary is written to the progress window.

---  2)  Parameters loaded from the .inf file (settings menu) ---


compareFastaInDir    directory in which to open infile file chooser

compareFastaOutDir   default directory in which to write output files


---  3)  The User Interface  ---

fasta file 1
      Path to the first fasta file.

fasta file 2
      Path to the second fasta file.
  
select output directory
      Directory to which outfiles will be written.

write shared seq to new file
      Tick if you want to pull out all sequences common to both input files 
      and write them to a new file.
      
name for file of shared seq
      The name of the file to contain all sequences common to both input
      files.  Only the name - not the path.  The output directory is given
      above.

write unique seq to new files
      Tick to write sequences unique to each input file to new files.

name for file of seq unique to file 1
      The name of the file to contain all sequences unique to input file 1.
      Only the name - not the path.  The output directory is given
      above.

name for file of seq unique to file 2
      The name of the file to contain all sequences unique to input file 2.
      Only the name - not the path.  The output directory is given
      above.

---  4)  Underlying Method   ---


see explanation in 'outline of function' section