gep330i.pml

最优化理论算法在对hiv蛋白酶抑制反应过程的参数控制软件仿真/

<CompanyName>
Pedro Mendes
</CompanyName>
<Program_Info>
        <Program_Name>Gepasi</Program_Name>
        <Program_Version>3.30</Program_Version>
        <Program_Release_Month>09</Program_Release_Month>
        <Program_Release_Day>04</Program_Release_Day>
        <Program_Release_Year>2002</Program_Release_Year>
        <Program_Cost_Dollars>0</Program_Cost_Dollars>
        <Program_Cost_Other_Code />
        <Program_Cost_Other />
        <Program_Type>Freeware</Program_Type>
        <Program_Release_Status>Minor Update</Program_Release_Status>
        <Program_Install_Support>Install and Uninstall</Program_Install_Support>
        <Program_OS_Support>Win95,Win98,WinME,WinNT 3.x,WinNT 4.x,WinXP,Windows2000</Program_OS_Support>
        <Program_Language>English</Program_Language>
<File_Info>
        <Filename_Versioned>gep330i.zip</Filename_Versioned>
        <Filename_Previous>gep321i.zip</Filename_Previous>
        <Filename_Generic />
        <Filename_Long />
        <File_Size_Bytes>3019947</File_Size_Bytes>
        <File_Size_K>2949</File_Size_K>
        <File_Size_MB>2.95</File_Size_MB>
    </File_Info>
<Expire_Info>
        <Has_Expire_Info>N</Has_Expire_Info>
        <Expire_Count />
        <Expire_Based_On>Days</Expire_Based_On>
        <Expire_Other_Info />
        <Expire_Month />
        <Expire_Day />
        <Expire_Year />
    </Expire_Info>
        <Program_Change_Info>added SBML support, bug fixes</Program_Change_Info>
        <Program_Specific_Category>Education</Program_Specific_Category>
        <Program_Categories>science, biochemistry, biology, chemistry, research</Program_Categories>
        <Program_System_Requirements />
        <Includes_JAVA_VM>N</Includes_JAVA_VM>
        <Includes_VB_Runtime>N</Includes_VB_Runtime>
        <Includes_DirectX>N</Includes_DirectX>
</Program_Info>
<Program_Descriptions>
<English>
        <Keywords>simulation, kinetics, systems biology, modeling, biochemistry</Keywords>
        <Char_Desc_45>Gepasi - Simulates biochemical kinetics</Char_Desc_45>
        <Char_Desc_80>Gepasi - Simulation and optimization of biochemical models</Char_Desc_80>
        <Char_Desc_250 />
        <Char_Desc_450>Gepasi simulates the kinetics of biochemical reactions and provides a number of tools to fit models to data, optimize model functions, performs metabolic control analysis and stability analysis. Gepasi allows the user to define models in the language of chemistry (reactions) instead of mathematics (matrices and differential equations). But the software uses a set of sophisticated numerical algorithms for fast and accurate results.</Char_Desc_450>
        <Char_Desc_2000>Gepasi is a software package for modeling biochemical systems. It simulates the kinetics of systems of biochemical reactions and provides a number of tools to fit models to data, optimize any function of the model, performs metabolic control analysis and linear stability analysis.
Gepasi simplifies the task of model building by assisting the user in translating the language of chemistry (reactions) to mathematics (matrices and differential equations) in a transparent way. This is combined with a set of sophisticated numerical algorithms that assure the results are obtained fast and accurate.Gepasi is intended primarily for research purposes but because of its user-friendly interface it is equally good for eduction.

Bibliography
- Mendes, P. (1993) GEPASI: A software package for modelling the dynamics, steady states and control of biochemical and other systems. Comput. Applic. Biosci. 9, 563-571. 
and more recently in Trends in Biochemical Sciences (Sept 1997): 
- Mendes, P. (1997) Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3. Trends Biochem. Sci. 22, 361-363. 
- Mendes, P. &amp; Kell, D.B. (1998) Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics 14, 869-883.</Char_Desc_2000>
</English>
</Program_Descriptions>
<Web_Info>
<Application_URLs>
        <Application_Info_URL>http://www.gepasi.org</Application_Info_URL>
        <Application_Order_URL>http://www.gepasi.org</Application_Order_URL>
        <Application_Screenshot_URL>http://www.gepasi.org/gep3plot.png</Application_Screenshot_URL>
        <Application_Icon_URL />
        <Application_XML_File_URL>http://www.gepasi.org/gep330i.pml</Application_XML_File_URL>
    </Application_URLs>
<Download_URLs>
        <Primary_Download_URL>http://www.gepasi.org</Primary_Download_URL>
        <Secondary_Download_URL />
        <Additional_Download_URL_1 />
        <Additional_Download_URL_2 />
    </Download_URLs>
</Web_Info>
<Permissions>
        <Distribution_Permissions>This software cannot be distributed for a fee.
This software cannot be included in magazines, books, etc. without express permission from the author.
This software can be freely distributed through the Internet but only in unmodified form and no fee can be charged.</Distribution_Permissions>
        <EULA>Gepasi 3
               (Bio)chemical Kinetics Simulation Software

Copyright (C) Pedro Mendes 1989, 1992, 1993, 1996-1999, 2002. All Rights 
Reserved. Portions of the code are Copyright (C) 1985-1998 Microsoft 
Corporation. The associated program &quot;gnuplot&quot; is Copyright (C) 1986-1993,
1998, 1999 Thomas Williams, Colin Kelley and many others.


                          GEPASI 3 END USER
                          LICENSE AGREEMENT

GRANT. Pedro Mendes (Author) hereby grants to you (User) a non-exclusive
license to use Gepasi 3 (Software) and accompanying documentation on the
terms below.

The User may: use the Software on any computer; make an unlimited number
of copies of the Software for personal use; redistribute the Software
provided this is done solely by transfer of unmodified copies of the
files gep3xxi.zip or gep3xxa.zip (where 憍