nb_kernel133_ppc_altivec.c

来自「最著名最快的分子模拟软件」· C语言 代码 · 共 888 行 · 第 1/3 页

C
888
字号
/* -*- mode: c; tab-width: 4; indent-tabs-mode: n; c-basic-offset: 4 -*-  * * $Id: nb_kernel133_ppc_altivec.c,v 1.1 2004/12/26 19:26:00 lindahl Exp $ *  * This file is part of Gromacs        Copyright (c) 1991-2004 * David van der Spoel, Erik Lindahl, University of Groningen. * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * To help us fund GROMACS development, we humbly ask that you cite * the research papers on the package. Check out http://www.gromacs.org *  * And Hey: * Gnomes, ROck Monsters And Chili Sauce */#ifdef HAVE_CONFIG_H#include <config.h>#endif/* Must come directly after config.h */#include <gmx_thread.h>#include "ppc_altivec_util.h"#include "nb_kernel133_ppc_altivec.h"void nb_kernel133_ppc_altivec  (int *             p_nri,                       int               iinr[],                       int               jindex[],                       int               jjnr[],                       int               shift[],                       float             shiftvec[],                       float             fshift[],                       int               gid[],                       float             pos[],                       float             faction[],                       float             charge[],                       float *           p_facel,                       float *           p_krf,                       float *           p_crf,                       float             Vc[],                       int               type[],                       int *             p_ntype,                       float             vdwparam[],                       float             Vvdw[],                       float *           p_tabscale,                       float             VFtab[],                       float             invsqrta[],                       float             dvda[],                       float *           p_gbtabscale,                       float             GBtab[],                       int *             p_nthreads,                       int *             count,                       void *            mtx,                       int *             outeriter,                       int *             inneriter,					   float *           work){	vector float iOx,iOy,iOz,iH1x,iH1y,iH1z,iH2x,iH2y,iH2z,iMx,iMy,iMz;	vector float dOx,dOy,dOz,dH1x,dH1y,dH1z,dH2x,dH2y,dH2z,dMx,dMy,dMz;	vector float vfacel,vcoulM,vcoulH1,vcoulH2,nul;	vector float Vvdwtot,c6,c12,VVd,VVr,FFd,FFr,tsc,r;	vector float fsO,fsH1,fsH2,fsM;	vector float vctot,qqM,qqH,iqM,iqH,jq;	vector float fiOx,fiOy,fiOz,fiH1x,fiH1y,fiH1z,fiH2x,fiH2y,fiH2z;	vector float fiMx,fiMy,fiMz;	vector float tmp1,tmp2,tmp3,tmp4;	vector float rinvH1,rinvH2,rinvM,rinvO;	vector float rinvsqH1,rinvsqH2,rinvsqM,rsqO,rsqH1,rsqH2,rsqM;	int n,k,ii,is3,ii3,ntiA,nj0,nj1;	int jnra,jnrb,jnrc,jnrd;	int j3a,j3b,j3c,j3d;	int nri, ntype, nouter, ninner;	int tja,tjb,tjc,tjd;#ifdef GMX_THREADS	int nn0, nn1;#endif      nouter   = 0;    ninner   = 0;    nri      = *p_nri;    ntype    = *p_ntype;	nul=vec_zero();	tsc=load_float_and_splat(p_tabscale);	vfacel=load_float_and_splat(p_facel);	ii         = iinr[0];	iqH        = vec_madd(load_float_and_splat(charge+ii+1),vfacel,nul);	iqM        = vec_madd(load_float_and_splat(charge+ii+3),vfacel,nul);	ntiA       = 2*ntype*type[ii];  #ifdef GMX_THREADS    nthreads = *p_nthreads;	do {		gmx_thread_mutex_lock((gmx_thread_mutex_t *)mtx);		nn0              = *count;		nn1              = nn0+(nri-nn0)/(2*nthreads)+3;		*count           = nn1;		gmx_thread_mutex_unlock((gmx_thread_mutex_t *)mtx);		if(nn1>nri) nn1=nri;		for(n=nn0; (n<nn1); n++) {#if 0		} /* maintain correct indentation even with conditional left braces */#endif#else /* without gmx_threads */		for(n=0;n<nri;n++) {#endif  			is3        = 3*shift[n];			ii         = iinr[n];			ii3        = 3*ii;			load_1_4atoms_shift_and_splat(pos+ii3,shiftvec+is3,&iOx,&iOy,&iOz,										  &iH1x,&iH1y,&iH1z,&iH2x,&iH2y,&iH2z,										  &iMx,&iMy,&iMz);			vctot      = nul;			Vvdwtot    = nul;			fiOx       = nul;			fiOy       = nul;			fiOz       = nul;			fiH1x      = nul;			fiH1y      = nul;			fiH1z      = nul;			fiH2x      = nul;			fiH2y      = nul;			fiH2z      = nul;			fiMx       = nul;			fiMy       = nul;			fiMz       = nul;			nj0        = jindex[n];			nj1        = jindex[n+1];    			for(k=nj0; k<(nj1-3); k+=4)             {				jnra            = jjnr[k];				jnrb            = jjnr[k+1];				jnrc            = jjnr[k+2];				jnrd            = jjnr[k+3];				j3a             = 3*jnra;				j3b             = 3*jnrb;				j3c             = 3*jnrc;				j3d             = 3*jnrd;				transpose_4_to_3(load_xyz(pos+j3a),								 load_xyz(pos+j3b),								 load_xyz(pos+j3c),								 load_xyz(pos+j3d),&dMx,&dMy,&dMz);				dOx             = vec_sub(iOx,dMx);				dOy             = vec_sub(iOy,dMy);				dOz             = vec_sub(iOz,dMz);				dH1x            = vec_sub(iH1x,dMx);				dH1y            = vec_sub(iH1y,dMy);				dH1z            = vec_sub(iH1z,dMz);				dH2x            = vec_sub(iH2x,dMx);				dH2y            = vec_sub(iH2y,dMy);				dH2z            = vec_sub(iH2z,dMz);				dMx             = vec_sub(iMx,dMx);				dMy             = vec_sub(iMy,dMy);				dMz             = vec_sub(iMz,dMz);      				rsqO            = vec_madd(dOx,dOx,nul);				rsqH1           = vec_madd(dH1x,dH1x,nul);				rsqH2           = vec_madd(dH2x,dH2x,nul);				rsqM            = vec_madd(dMx,dMx,nul);				rsqO            = vec_madd(dOy,dOy,rsqO);				rsqH1           = vec_madd(dH1y,dH1y,rsqH1);				rsqH2           = vec_madd(dH2y,dH2y,rsqH2);				rsqM            = vec_madd(dMy,dMy,rsqM);				rsqO            = vec_madd(dOz,dOz,rsqO);				rsqH1           = vec_madd(dH1z,dH1z,rsqH1);				rsqH2           = vec_madd(dH2z,dH2z,rsqH2);				rsqM            = vec_madd(dMz,dMz,rsqM);				rinvO           = do_invsqrt(rsqO);				do_3_invsqrt(rsqM,rsqH1,rsqH2,&rinvM,&rinvH1,&rinvH2);				rinvsqM         = vec_madd(rinvM,rinvM,nul);				rinvsqH1        = vec_madd(rinvH1,rinvH1,nul);				rinvsqH2        = vec_madd(rinvH2,rinvH2,nul);				r               = vec_madd(rsqO,rinvO,nul);								tja             = ntiA+2*type[jnra];				tjb             = ntiA+2*type[jnrb];				tjc             = ntiA+2*type[jnrc];				tjd             = ntiA+2*type[jnrd];				/* load 4 j charges and multiply by iq */				jq=load_4_float(charge+jnra,charge+jnrb,charge+jnrc,								charge+jnrd);				load_4_pair(vdwparam+tja,vdwparam+tjb,vdwparam+tjc,vdwparam+tjd,&c6,&c12);				do_4_ljtable_lj(VFtab,vec_madd(r,tsc,nul),&VVd,&FFd,&VVr,&FFr);				Vvdwtot         = vec_madd(c6,VVd,Vvdwtot);				fsO             = vec_nmsub(c6,FFd,nul);				Vvdwtot         = vec_madd(c12,VVr,Vvdwtot);				fsO             = vec_nmsub(c12,FFr,fsO);				fsO             = vec_madd(fsO,tsc,nul);				fsO             = vec_madd(fsO,rinvO,nul);				qqM             = vec_madd(iqM,jq,nul);				qqH             = vec_madd(iqH,jq,nul);				vcoulM          = vec_madd(qqM,rinvM,nul);				vcoulH1         = vec_madd(qqH,rinvH1,nul);				vcoulH2         = vec_madd(qqH,rinvH2,nul);				fsH1            = vec_madd(vcoulH1,rinvsqH1,nul);				fsH2            = vec_madd(vcoulH2,rinvsqH2,nul);				fsM             = vec_madd(vcoulM,rinvsqM,nul);				vctot           = vec_add(vctot,vcoulM);				vcoulH1         = vec_add(vcoulH1,vcoulH2);				vctot           = vec_add(vctot,vcoulH1);				fiOx            = vec_madd(fsO,dOx,fiOx); /* +=fx */				dOx             = vec_nmsub(fsO,dOx,nul); /* -fx */				fiOy            = vec_madd(fsO,dOy,fiOy); /* +=fy */				dOy             = vec_nmsub(fsO,dOy,nul); /* -fy */				fiOz            = vec_madd(fsO,dOz,fiOz); /* +=fz */				dOz             = vec_nmsub(fsO,dOz,nul); /* -fz */				fiH1x           = vec_madd(fsH1,dH1x,fiH1x); /* +=fx */				dOx             = vec_nmsub(fsH1,dH1x,dOx); /* -fx */				fiH1y           = vec_madd(fsH1,dH1y,fiH1y); /* +=fy */				dOy             = vec_nmsub(fsH1,dH1y,dOy); /* -fy */				fiH1z           = vec_madd(fsH1,dH1z,fiH1z); /* +=fz */				dOz             = vec_nmsub(fsH1,dH1z,dOz); /* -fz */				fiH2x           = vec_madd(fsH2,dH2x,fiH2x); /* +=fx */				dOx             = vec_nmsub(fsH2,dH2x,dOx); /* -fx */				fiH2y           = vec_madd(fsH2,dH2y,fiH2y); /* +=fy */				dOy             = vec_nmsub(fsH2,dH2y,dOy); /* -fy */				fiH2z           = vec_madd(fsH2,dH2z,fiH2z); /* +=fz */				dOz             = vec_nmsub(fsH2,dH2z,dOz); /* -fz */				fiMx            = vec_madd(fsM,dMx,fiMx); /* +=fx */				dOx             = vec_nmsub(fsM,dMx,dOx); /* -fx */				fiMy            = vec_madd(fsM,dMy,fiMy); /* +=fy */				dOy             = vec_nmsub(fsM,dMy,dOy); /* -fy */				fiMz            = vec_madd(fsM,dMz,fiMz); /* +=fz */				dOz             = vec_nmsub(fsM,dMz,dOz); /* -fz */      				transpose_3_to_4(dOx,dOy,dOz,&tmp1,&tmp2,&tmp3,&tmp4);				add_xyz_to_mem(faction+j3a,tmp1);				add_xyz_to_mem(faction+j3b,tmp2);				add_xyz_to_mem(faction+j3c,tmp3);				add_xyz_to_mem(faction+j3d,tmp4);			} 			if(k<(nj1-2))             {				jnra            = jjnr[k];				jnrb            = jjnr[k+1];				jnrc            = jjnr[k+2];				j3a             = 3*jnra;				j3b             = 3*jnrb;				j3c             = 3*jnrc;				transpose_4_to_3(load_xyz(pos+j3a),								 load_xyz(pos+j3b),								 load_xyz(pos+j3c),nul,&dMx,&dMy,&dMz);				dOx             = vec_sub(iOx,dMx);				dOy             = vec_sub(iOy,dMy);				dOz             = vec_sub(iOz,dMz);				dH1x            = vec_sub(iH1x,dMx);				dH1y            = vec_sub(iH1y,dMy);				dH1z            = vec_sub(iH1z,dMz);				dH2x            = vec_sub(iH2x,dMx);				dH2y            = vec_sub(iH2y,dMy);				dH2z            = vec_sub(iH2z,dMz);				dMx             = vec_sub(iMx,dMx);				dMy             = vec_sub(iMy,dMy);				dMz             = vec_sub(iMz,dMz);      				rsqO            = vec_madd(dOx,dOx,nul);				rsqH1           = vec_madd(dH1x,dH1x,nul);				rsqH2           = vec_madd(dH2x,dH2x,nul);				rsqM            = vec_madd(dMx,dMx,nul);				rsqO            = vec_madd(dOy,dOy,rsqO);				rsqH1           = vec_madd(dH1y,dH1y,rsqH1);				rsqH2           = vec_madd(dH2y,dH2y,rsqH2);				rsqM            = vec_madd(dMy,dMy,rsqM);				rsqO            = vec_madd(dOz,dOz,rsqO);				rsqH1           = vec_madd(dH1z,dH1z,rsqH1);				rsqH2           = vec_madd(dH2z,dH2z,rsqH2);				rsqM            = vec_madd(dMz,dMz,rsqM);				rinvO           = do_invsqrt(rsqO);				do_3_invsqrt(rsqM,rsqH1,rsqH2,&rinvM,&rinvH1,&rinvH2);				zero_highest_element_in_vector(&rinvO);				zero_highest_element_in_vector(&rsqO);								zero_highest_element_in_3_vectors(&rinvM,&rinvH1,&rinvH2);				rinvsqM         = vec_madd(rinvM,rinvM,nul);				rinvsqH1        = vec_madd(rinvH1,rinvH1,nul);				rinvsqH2        = vec_madd(rinvH2,rinvH2,nul);				r               = vec_madd(rsqO,rinvO,nul);								jq=load_3_float(charge+jnra,charge+jnrb,charge+jnrc);				tja             = ntiA+2*type[jnra];				tjb             = ntiA+2*type[jnrb];				tjc             = ntiA+2*type[jnrc];				/* load 3 j charges and multiply by iq */				load_3_pair(vdwparam+tja,vdwparam+tjb,vdwparam+tjc,&c6,&c12);				do_3_ljtable_lj(VFtab,vec_madd(r,tsc,nul),&VVd,&FFd,&VVr,&FFr);				Vvdwtot         = vec_madd(c6,VVd,Vvdwtot);				fsO             = vec_nmsub(c6,FFd,nul);

⌨️ 快捷键说明

复制代码Ctrl + C
搜索代码Ctrl + F
全屏模式F11
增大字号Ctrl + =
减小字号Ctrl + -
显示快捷键?