nb_kernel211_ppc_altivec.c

来自「最著名最快的分子模拟软件」· C语言 代码 · 共 869 行 · 第 1/3 页

	vector float rinvO,rinvH1,rinvH2,rinvsqO,rsqO,rsqH1,rsqH2;  

	int n,k,ii,is3,ii3,ntiA,nj0,nj1;
	int jnra,jnrb,jnrc,jnrd;
	int j3a,j3b,j3c,j3d;
	int nri, ntype, nouter, ninner;
	int tja,tjb,tjc,tjd;
#ifdef GMX_THREADS
	int nn0, nn1;
#endif

    nouter   = 0;
    ninner   = 0;
    nri      = *p_nri;
    ntype    = *p_ntype;
	nul=vec_zero();
	vfacel=load_float_and_splat(p_facel);
	vkrf=load_float_and_splat(p_krf);
	vcrf=load_float_and_splat(p_crf);
	ii         = iinr[0];
	iqO        = vec_madd(load_float_and_splat(charge+ii),vfacel,nul);
	iqH        = vec_madd(load_float_and_splat(charge+ii+1),vfacel,nul);
	ntiA       = 2*ntype*type[ii];
  
#ifdef GMX_THREADS
    nthreads = *p_nthreads;
	do {
		gmx_thread_mutex_lock((gmx_thread_mutex_t *)mtx);
		nn0              = *count;
		nn1              = nn0+(nri-nn0)/(2*nthreads)+3;
		*count           = nn1;
		gmx_thread_mutex_unlock((gmx_thread_mutex_t *)mtx);
		if(nn1>nri) nn1=nri;
		for(n=nn0; (n<nn1); n++) {
#if 0
		} /* maintain correct indentation even with conditional left braces */
#endif
#else /* without gmx_threads */
		for(n=0;n<nri;n++) {
#endif  
			is3        = 3*shift[n];
			ii         = iinr[n];
			ii3        = 3*ii;
			load_1_3atoms_shift_and_splat(pos+ii3,shiftvec+is3,&iOx,&iOy,&iOz,
										  &iH1x,&iH1y,&iH1z,&iH2x,&iH2y,&iH2z);
			vctot      = nul;
			Vvdwtot     = nul;
			nj0        = jindex[n];
			nj1        = jindex[n+1];
    
			for(k=nj0; k<(nj1-3); k+=4) {
				jnra            = jjnr[k];
				jnrb            = jjnr[k+1];
				jnrc            = jjnr[k+2];
				jnrd            = jjnr[k+3];
				j3a             = 3*jnra;
				j3b             = 3*jnrb;
				j3c             = 3*jnrc;
				j3d             = 3*jnrd;
				transpose_4_to_3(load_xyz(pos+j3a),
								 load_xyz(pos+j3b),
								 load_xyz(pos+j3c),
								 load_xyz(pos+j3d),&dH2x,&dH2y,&dH2z);
				dOx             = vec_sub(iOx,dH2x);
				dOy             = vec_sub(iOy,dH2y);
				dOz             = vec_sub(iOz,dH2z);
				dH1x            = vec_sub(iH1x,dH2x);
				dH1y            = vec_sub(iH1y,dH2y);
				dH1z            = vec_sub(iH1z,dH2z);
				dH2x            = vec_sub(iH2x,dH2x);
				dH2y            = vec_sub(iH2y,dH2y);
				dH2z            = vec_sub(iH2z,dH2z);
      
				rsqO            = vec_madd(dOx,dOx,nul);
				rsqH1           = vec_madd(dH1x,dH1x,nul);
				rsqH2           = vec_madd(dH2x,dH2x,nul);
				rsqO            = vec_madd(dOy,dOy,rsqO);
				rsqH1           = vec_madd(dH1y,dH1y,rsqH1);
				rsqH2           = vec_madd(dH2y,dH2y,rsqH2);
				rsqO            = vec_madd(dOz,dOz,rsqO);
				rsqH1           = vec_madd(dH1z,dH1z,rsqH1);
				rsqH2           = vec_madd(dH2z,dH2z,rsqH2);
				do_3_invsqrt(rsqO,rsqH1,rsqH2,&rinvO,&rinvH1,&rinvH2);
				rinvsqO         = vec_madd(rinvO,rinvO,nul);
				rinvsix         = vec_madd(rinvsqO,rinvsqO,nul);
				rinvsix         = vec_madd(rinvsix,rinvsqO,nul);
				tja             = ntiA+2*type[jnra];
				tjb             = ntiA+2*type[jnrb];
				tjc             = ntiA+2*type[jnrc];
				tjd             = ntiA+2*type[jnrd];
				/* load 4 j charges and multiply by iq */
				jq=load_4_float(charge+jnra,charge+jnrb,
								charge+jnrc,charge+jnrd);
				load_4_pair(vdwparam+tja,vdwparam+tjb,vdwparam+tjc,vdwparam+tjd,&c6,&c12);
				qqO             = vec_madd(iqO,jq,nul);
				qqH             = vec_madd(iqH,jq,nul);
				krsqO           = vec_madd(vkrf,rsqO,nul);
				krsqH1          = vec_madd(vkrf,rsqH1,nul);
				krsqH2          = vec_madd(vkrf,rsqH2,nul);
				Vvdwtot          = vec_nmsub(c6,rinvsix,Vvdwtot);
				Vvdwtot          = vec_madd(c12,vec_madd(rinvsix,rinvsix,nul),
										   Vvdwtot);
				vcoulO          = vec_add(rinvO,krsqO);
				vcoulH1         = vec_add(rinvH1,krsqH1);
				vcoulH2         = vec_add(rinvH2,krsqH2);
				vcoulO          = vec_sub(vcoulO,vcrf);
				vcoulH1         = vec_sub(vcoulH1,vcrf);
				vcoulH2         = vec_sub(vcoulH2,vcrf);
				vctot           = vec_madd(qqO,vcoulO,vctot);
				vctot           = vec_madd(qqH,vcoulH1,vctot);
				vctot           = vec_madd(qqH,vcoulH2,vctot);
			} 
			if(k<(nj1-2)) {
				jnra            = jjnr[k];
				jnrb            = jjnr[k+1];
				jnrc            = jjnr[k+2];
				j3a             = 3*jnra;
				j3b             = 3*jnrb;
				j3c             = 3*jnrc;
				transpose_4_to_3(load_xyz(pos+j3a),
								 load_xyz(pos+j3b),
								 load_xyz(pos+j3c),nul,&dH2x,&dH2y,&dH2z);
				dOx             = vec_sub(iOx,dH2x);
				dOy             = vec_sub(iOy,dH2y);
				dOz             = vec_sub(iOz,dH2z);
				dH1x            = vec_sub(iH1x,dH2x);
				dH1y            = vec_sub(iH1y,dH2y);
				dH1z            = vec_sub(iH1z,dH2z);
				dH2x            = vec_sub(iH2x,dH2x);
				dH2y            = vec_sub(iH2y,dH2y);
				dH2z            = vec_sub(iH2z,dH2z);
      
				rsqO            = vec_madd(dOx,dOx,nul);
				rsqH1           = vec_madd(dH1x,dH1x,nul);
				rsqH2           = vec_madd(dH2x,dH2x,nul);
				rsqO            = vec_madd(dOy,dOy,rsqO);
				rsqH1           = vec_madd(dH1y,dH1y,rsqH1);
				rsqH2           = vec_madd(dH2y,dH2y,rsqH2);
				rsqO            = vec_madd(dOz,dOz,rsqO);
				rsqH1           = vec_madd(dH1z,dH1z,rsqH1);
				rsqH2           = vec_madd(dH2z,dH2z,rsqH2);
				zero_highest_element_in_3_vectors(&rsqO,&rsqH1,&rsqH2);
				do_3_invsqrt(rsqO,rsqH1,rsqH2,&rinvO,&rinvH1,&rinvH2);
				zero_highest_element_in_3_vectors(&rinvO,&rinvH1,&rinvH2);
				rinvsqO         = vec_madd(rinvO,rinvO,nul);
				rinvsix         = vec_madd(rinvsqO,rinvsqO,nul);
				rinvsix         = vec_madd(rinvsix,rinvsqO,nul);
				jq=load_3_float(charge+jnra,charge+jnrb,charge+jnrc);      
				tja             = ntiA+2*type[jnra];
				tjb             = ntiA+2*type[jnrb];
				tjc             = ntiA+2*type[jnrc];
				load_3_pair(vdwparam+tja,vdwparam+tjb,vdwparam+tjc,&c6,&c12);
				qqO             = vec_madd(iqO,jq,nul);
				qqH             = vec_madd(iqH,jq,nul);
				krsqO           = vec_madd(vkrf,rsqO,nul);
				krsqH1          = vec_madd(vkrf,rsqH1,nul);
				krsqH2          = vec_madd(vkrf,rsqH2,nul);
				Vvdwtot          = vec_nmsub(c6,rinvsix,Vvdwtot);
				Vvdwtot          = vec_madd(c12,vec_madd(rinvsix,rinvsix,nul),
										   Vvdwtot);
				vcoulO          = vec_add(rinvO,krsqO);
				vcoulH1         = vec_add(rinvH1,krsqH1);
				vcoulH2         = vec_add(rinvH2,krsqH2);
				vcoulO          = vec_sub(vcoulO,vcrf);
				vcoulH1         = vec_sub(vcoulH1,vcrf);
				vcoulH2         = vec_sub(vcoulH2,vcrf);
				vctot           = vec_madd(qqO,vcoulO,vctot);
				vctot           = vec_madd(qqH,vcoulH1,vctot);
				vctot           = vec_madd(qqH,vcoulH2,vctot);
			} else if(k<(nj1-1)) {
				jnra            = jjnr[k];
				jnrb            = jjnr[k+1];
				j3a             = 3*jnra;
				j3b             = 3*jnrb;
				transpose_2_to_3(load_xyz(pos+j3a),
								 load_xyz(pos+j3b),&dH2x,&dH2y,&dH2z);
				dOx             = vec_sub(iOx,dH2x);
				dOy             = vec_sub(iOy,dH2y);
				dOz             = vec_sub(iOz,dH2z);
				dH1x            = vec_sub(iH1x,dH2x);
				dH1y            = vec_sub(iH1y,dH2y);
				dH1z            = vec_sub(iH1z,dH2z);
				dH2x            = vec_sub(iH2x,dH2x);
				dH2y            = vec_sub(iH2y,dH2y);
				dH2z            = vec_sub(iH2z,dH2z);
      
				rsqO            = vec_madd(dOx,dOx,nul);
				rsqH1           = vec_madd(dH1x,dH1x,nul);
				rsqH2           = vec_madd(dH2x,dH2x,nul);
				rsqO            = vec_madd(dOy,dOy,rsqO);
				rsqH1           = vec_madd(dH1y,dH1y,rsqH1);
				rsqH2           = vec_madd(dH2y,dH2y,rsqH2);
				rsqO            = vec_madd(dOz,dOz,rsqO);
				rsqH1           = vec_madd(dH1z,dH1z,rsqH1);
				rsqH2           = vec_madd(dH2z,dH2z,rsqH2);
				zero_highest_2_elements_in_3_vectors(&rsqO,&rsqH1,&rsqH2);
				do_3_invsqrt(rsqO,rsqH1,rsqH2,&rinvO,&rinvH1,&rinvH2);
				zero_highest_2_elements_in_3_vectors(&rinvO,&rinvH1,&rinvH2);
				rinvsqO         = vec_madd(rinvO,rinvO,nul);
				rinvsix         = vec_madd(rinvsqO,rinvsqO,nul);
				rinvsix         = vec_madd(rinvsix,rinvsqO,nul);
				tja             = ntiA+2*type[jnra];
				tjb             = ntiA+2*type[jnrb];
				/* load 2 j charges and multiply by iq */
				jq=load_2_float(charge+jnra,charge+jnrb);
				load_2_pair(vdwparam+tja,vdwparam+tjb,&c6,&c12);
				qqO             = vec_madd(iqO,jq,nul);
				qqH             = vec_madd(iqH,jq,nul);
				krsqO           = vec_madd(vkrf,rsqO,nul);
				krsqH1          = vec_madd(vkrf,rsqH1,nul);
				krsqH2          = vec_madd(vkrf,rsqH2,nul);
				Vvdwtot          = vec_nmsub(c6,rinvsix,Vvdwtot);
				Vvdwtot          = vec_madd(c12,vec_madd(rinvsix,rinvsix,nul),
										   Vvdwtot);
				vcoulO          = vec_add(rinvO,krsqO);
				vcoulH1         = vec_add(rinvH1,krsqH1);
				vcoulH2         = vec_add(rinvH2,krsqH2);
				vcoulO          = vec_sub(vcoulO,vcrf);
				vcoulH1         = vec_sub(vcoulH1,vcrf);
				vcoulH2         = vec_sub(vcoulH2,vcrf);
				vctot           = vec_madd(qqO,vcoulO,vctot);
				vctot           = vec_madd(qqH,vcoulH1,vctot);
				vctot           = vec_madd(qqH,vcoulH2,vctot);
			} else if(k<nj1) {
				jnra            = jjnr[k];
				j3a             = 3*jnra;
				transpose_1_to_3(load_xyz(pos+j3a),&dH2x,&dH2y,&dH2z);
				dOx             = vec_sub(iOx,dH2x);
				dOy             = vec_sub(iOy,dH2y);
				dOz             = vec_sub(iOz,dH2z);
				dH1x            = vec_sub(iH1x,dH2x);
				dH1y            = vec_sub(iH1y,dH2y);
				dH1z            = vec_sub(iH1z,dH2z);
				dH2x            = vec_sub(iH2x,dH2x);
				dH2y            = vec_sub(iH2y,dH2y);
				dH2z            = vec_sub(iH2z,dH2z);
      
				rsqO            = vec_madd(dOx,dOx,nul);
				rsqH1           = vec_madd(dH1x,dH1x,nul);
				rsqH2           = vec_madd(dH2x,dH2x,nul);
				rsqO            = vec_madd(dOy,dOy,rsqO);
				rsqH1           = vec_madd(dH1y,dH1y,rsqH1);
				rsqH2           = vec_madd(dH2y,dH2y,rsqH2);
				rsqO            = vec_madd(dOz,dOz,rsqO);
				rsqH1           = vec_madd(dH1z,dH1z,rsqH1);
				rsqH2           = vec_madd(dH2z,dH2z,rsqH2);
				zero_highest_3_elements_in_3_vectors(&rsqO,&rsqH1,&rsqH2);
				do_3_invsqrt(rsqO,rsqH1,rsqH2,&rinvO,&rinvH1,&rinvH2);
				zero_highest_3_elements_in_3_vectors(&rinvO,&rinvH1,&rinvH2);
				rinvsqO         = vec_madd(rinvO,rinvO,nul);
				rinvsix         = vec_madd(rinvsqO,rinvsqO,nul);
				rinvsix         = vec_madd(rinvsix,rinvsqO,nul);
				tja             = ntiA+2*type[jnra];
				/* load 1 j charges and multiply by iq */
				jq=load_1_float(charge+jnra);
				load_1_pair(vdwparam+tja,&c6,&c12);
				qqO             = vec_madd(iqO,jq,nul);
				qqH             = vec_madd(iqH,jq,nul);
				krsqO           = vec_madd(vkrf,rsqO,nul);
				krsqH1          = vec_madd(vkrf,rsqH1,nul);
				krsqH2          = vec_madd(vkrf,rsqH2,nul);
				Vvdwtot          = vec_nmsub(c6,rinvsix,Vvdwtot);
				Vvdwtot          = vec_madd(c12,vec_madd(rinvsix,rinvsix,nul),
										   Vvdwtot);
				vcoulO          = vec_add(rinvO,krsqO);
				vcoulH1         = vec_add(rinvH1,krsqH1);
				vcoulH2         = vec_add(rinvH2,krsqH2);
				vcoulO          = vec_sub(vcoulO,vcrf);
				vcoulH1         = vec_sub(vcoulH1,vcrf);
				vcoulH2         = vec_sub(vcoulH2,vcrf);
				vctot           = vec_madd(qqO,vcoulO,vctot);
				vctot           = vec_madd(qqH,vcoulH1,vctot);
				vctot           = vec_madd(qqH,vcoulH2,vctot);
			}
			/* update outer data */
			add_vector_to_float(Vc+gid[n],vctot);
			add_vector_to_float(Vvdw+gid[n],Vvdwtot);
			ninner += nj1 - nj0;
		}
#ifdef GMX_THREADS
		nouter += nn1 - nn0;
	} while (nn1<nri);
#else
	nouter = nri;
#endif
	*outeriter = nouter;
	*inneriter = ninner;
}