execute_act.h

C-package of "Long Short-Term Memory" for Protein classification

/*
 * $Id: execute_act.h 1212 2006-10-28 07:19:03 +0000 (Sat, 28 Oct 2006) mhe $
 */

extern int seq_cor, sequ_reset, test_size, test_end;
extern int element, example, numb_seq, w_up, weight_up, stop_learn,  class_err, classnon_err, stop_class;
extern int positivetrain, negativetrain, positivetest, negativetest;
extern int maxepoch, epoch, ext_epochs, test_aus, training_size, w_out;
extern int *length_t, *length;
extern double **inp, **inp_t;
extern int **inp_idx, **inp_idx_t;
extern int *tar, *tar_t;
extern char **aaSym, **aaSym_t;

extern double targetvalue0, targetvalue1;

extern int *prand, targ;
extern int prot_current_idx, training_size, test_size;
extern char **fasta_desc;
extern FILE *ma;

void shuffle(int*, int);
void shuffletest(int*, int);

extern double target, epoch_err, stop_mse, seq_err, **W;

void reset_net();
void output_epoch(int, int);
void weight_update();
void weight_out(double**);
void nettest();
void set_sequence(double **, int **, char **, int, int);