alloc.h

C-package of "Long Short-Term Memory" for Protein classification

/*
 * $Id: alloc.h 1197 2006-10-09 04:31:55 +0000 (Mon, 09 Oct 2006) mhe $
 * 
 */
extern char **aaSym;
extern char **aaSym_t;
extern char **fasta_desc, **fasta_desc_t;
extern double **inp;
extern double **inp_t;
extern int *tar;
extern int *tar_t;
extern int **inp_idx;
extern int **inp_idx_t;
extern int *prand, *length, *length_t;
extern double *Y_in, *Y_out,
              *Yk_new, *Yk_old, 
              **G, **H, **S, **Yc, **W, **DW, **DWold,
              ***SI, ***SC;
              
extern double *e;
extern double **ec;
extern double *eo;
extern double **es;
     

extern int maxseqlentrain, maxseqlentest, training_size, test_size, windowsize, num_blocks;

char *allocCharArray(char*, int);
char **alloc2DimCharArray(char**, int, int);
int *allocIntArray(int*, int);
int **alloc2DimIntArray(int**, int, int);
double *allocDoubleArray(double*, int);
double **alloc2DimDoubleArray(double**, int, int);
double ***alloc3DimDoubleArray(double***, int, int, int);