makefile

C-package of "Long Short-Term Memory" for Protein classification

#
# $Id: Makefile 1274 2007-05-09 16:45:16Z mhe $
#

CC=gcc

binary = lstm

#CC=icc

CFLAGS=-Wall -O3

#CFLAGS=-Wall -O3 -march=opteron
#CFLAGS=-g -O3 -Wall
#CFLAGS=-g -ftest-coverage -fprofile-arcs -Wall
#CFLAGS= -O3 -tpp7 -xiMK
#CFLAGS=-O3 -mcpu=ultrasparc -Wall
#CFLAGS=-Wall -O3 -ffast-math -malign-double -fprefetch-loop-arrays -fsched-spec-load -msse2 -march=pentium4
#CFLAGS=-Wall -O3 -ffast-math -malign-double -fprefetch-loop-arrays -frerun-loop-opt -funroll-all-loops -march=athlon
#CFLAGS=-O3 -march=pentiumiii
#CFLAGS=-prof_gen -prof_dir profdata -O3 -march=pentiumiii
#CFLAGS=-prof_use -prof_dir profdata -O3 -march=pentiumiii
#CFLAGS=-march=pentiumiii
#CFLAGS=-O3 -march=pentiumiii
#CFLAGS=-Wall -O3 -msse -frerun-loop-opt -funroll-all-loops -march=pentium3
LDFLAGS=-lm

objects = main.o tools.o mmu.o alloc.o loadw.o out.o reset_net.o roc.o execute_act.o execute_act_t.o forward_pass.o backward_pass.o comp_err.o test.o getpars.o getfastasets.o set_sequence.o initia.o derivatives.o weight_update.o

all: $(objects)

$(objects): %.o: %.c Makefile %.h lstm.h
	$(CC) -c $(CFLAGS)  $< -o $@

$(binary) : $(objects)
	$(CC) $(LDFLAGS) -o $(binary) $(objects) 

all :
	${MAKE} $(binary)

.PHONY : clean
clean :
	rm $(binary) $(objects)