neg-train.1.27.1.2.fasta

C-package of "Long Short-Term Memory" for Protein classification

SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA
>d1dp7p_ 1.4.5.19.1 MHC class II transcription factor RFX1 {Human (Homo sapiens)}
TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA
>d1puee_ 1.4.5.20.4 Transcription factor PU.1, residues 171-259 {Murine (Mus musculus)}
KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVKKKLTYQFSGEV
>d1awca_ 1.4.5.20.5 GA binding protein (GABP) alpha {Mouse (Mus musculus)}
IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVIECEQKKLARM
>d1hks__ 1.4.5.21.1 Heat-shock transcription factor {Drosophila melanogaster}
GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK
>d1bi1_1 1.4.5.23.1 (4-64) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae}
LVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQM
>d1b1ba1 1.4.5.23.2 (1-64) Iron-dependent regulator {Mycobacterium tuberculosis}
MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLEL
>d1b6a_1 1.4.5.24.2 (375-448) Methionine aminopeptidase, insert domain {Human (Homo sapiens)}
HDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLC
>d1qpma_ 1.4.5.25.1 mu transposase, DNA-binding domain {Bacteriophage mu}
KSIWCSPQEIMAADGMPGSVAGVHYRANVQGWTKRKKEGVKGGKAVEYDVMSMPTKEREQVIAHLGLST
>d1tns__ 1.4.5.25.1 mu transposase, DNA-binding domain {Bacteriophage mu}
MELWVSPKELANLPGLPKTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAALLLRQGEIETSLGYFE
>d1wjaa_ 1.4.7.1.1 N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus, type 1, HIV-1}
FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKG
>d1wjab_ 1.4.7.1.1 N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus, type 1, HIV-1}
FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKG
>d1wjca_ 1.4.7.1.1 N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus, type 1, HIV-1}
FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKG
>d1wjcb_ 1.4.7.1.1 N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus, type 1, HIV-1}
FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKG
>d1wjea_ 1.4.7.1.1 N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus, type 1, HIV-1}
FLDGIDKAQEECEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLK
>d1wjeb_ 1.4.7.1.1 N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus, type 1, HIV-1}
FLDGIDKAQEECEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLK
>d1aub__ 1.4.7.1.2 N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus, type 2, HIV-2}
FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQQK
>d1ef4a_ 1.4.8.1.1 RNA polymerase subunit RPB10 {Methanobacterium thermoautotrophicum}
MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVETW
>d1bdxb1 1.5.1.1.1 (156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli}
TDDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
>d1hjp_1 1.5.1.1.1 (158-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli}
DAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
>d1bvsa1 1.5.1.1.2 (148-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae}
NAVRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALSLLGKTR
>d1bvsd1 1.5.1.1.2 (147-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae}
GNAVRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALSLLGKTR
>d1bvse1 1.5.1.1.2 (148-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae}
NAVRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALSLLGKTR
>d1bvsg1 1.5.1.1.2 (148-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae}
NAVRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALSLLGKTR
>d1bvsh1 1.5.1.1.2 (147-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae}
GNAVRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALSLLGKTR
>d1dv0a_ 1.5.2.1.1 C-terminal UBA domain of DNA repair protein {Human (Homo sapiens)}
QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
>d1enwa_ 1.5.4.1.1 Elongation factor TFIIS domain 2 {Yeast (Saccharomyces cerevisiae)}
GSHMPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAP
>d1cuna1 1.7.1.1.2 (7-115) Spectrin {Chicken (Gallus gallus)}
MVHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ
>d1e2aa_ 1.7.2.1.1 Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis}
MNREEMTLLGFEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMHGQDHLMTTILLKDVIHHLIELYKR
>d1chua1 1.7.3.1.1 (423-533) L-aspartate oxidase {Escherichia coli}
DESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSGPSI
>d1fuma1 1.7.3.1.2 (443-575) Fumarate reductase flavoprotein subunit {Escherichia coli}
DGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPP
>d1qsda_ 1.7.4.1.1 beta-Tubulin binding post-chaperonin cofactor Rbl2p {Baker's yeast (Saccharomyces cerevisiae)}
TQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLDS
>d1deeg_ 1.8.1.1.1 Immunoglobulin-binding protein A modules {Staphylococcus aureus}
DQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPK
>d1deeh_ 1.8.1.1.1 Immunoglobulin-binding protein A modules {Staphylococcus aureus}
FNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPK
>d1gab__ 1.8.1.2.1 An albumin-binding domain {Peptostreptococcus magnus}
TIDQWLLKNAKEDAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILKAHA
>d1bbl__ 1.9.1.1.2 E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli}
LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL
>d2pdd__ 1.9.1.1.3 E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus}
VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGA
>d2pde__ 1.9.1.1.3 E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus}
VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGA
>d1erc__ 1.10.1.1.1 ER-1 {Euplotes raikovi}
DACEQAAIQCVESACESLCTEGEDRTGCYMYIYSNCPPYV
>d1erp__ 1.10.1.1.3 ER-10 {Euplotes raikovi}
DLCEQSALQCNEQGCHNFCSPEDKPGCLGMVWNPELCP
>d1ery__ 1.10.1.1.4 ER-11 {Euplotes raikovi}
DECANAAAQCSITLCNLYCGPLIEICELTVMQNCEPPFS
>d1aca__ 1.11.1.1.1 Acyl-CoA binding protein {Bovine (Bos taurus)}
SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI
>d1ef1a1 1.11.2.1.1 (88-198) Moesin {Human (Homo sapiens)}
DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGXLREDAVLEYLKIAQDL
>d1kdxa_ 1.12.1.1.1 Kix domain of CBP (creb binding protein) {Mouse (Mus musculus)}
GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEE
>d1lre__ 1.13.1.1.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 {Human (Homo sapiens)}
GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDAR
>d1qqva_ 1.14.1.1.1 Thermostable subdomain from chicken villin headpiece {Chicken (Gallus gallus)}
PTKLETFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF
>d1vii__ 1.14.1.1.1 Thermostable subdomain from chicken villin headpiece {Chicken (Gallus gallus)}
MLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF
>d1tbaa_ 1.15.1.1.1 TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster)}
EGSIGNGLDLTGILFGNIDSEGRLLQDDDGEGRGGTGFDAELRENIGSLSKLGLDSMLLEVIDLKEA
>d1a32__ 1.16.1.2.1 Ribosomal protein S15 {Bacillus stearothermophilus}
LTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEKLGL
>d1dk1a_ 1.16.1.2.2 Ribosomal protein S15 {Thermus thermophilus}
PITKEEKQKVXQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLXXVGQRRRLLRYLQREDPERYRXLIEKLGI
>d2hp8__ 1.17.1.1.1 p8-MTCP1 {Human (Homo sapiens)}
MPQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKEEEENLTRKSASK
>d2end__ 1.18.1.1.1 T4 endonuclease V {bacteriophage T4, (Escherichia coli)}
TRINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
>d1bmfg_ 1.20.1.1.1 ATP syntase (F1-ATPase), gamma subunit {Bovine (Bos taurus)}
ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL
>d1lbu_1 1.21.1.1.1 (1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G}
DGCYTWSGTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQLQDDDCTP
>d1ckta_ 1.22.1.1.1 HMG1, domains A and B {Rat/Hamster (Rattus norvegicus/Cricetulus griseus)}
KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY
>d2ezda_ 1.22.1.1.2 HMG1, domains A and B {Human (Homo sapiens), HMG-I(Y)}
VPTPKRPRGRPKGSKNKGAAK
>d2ezea_ 1.22.1.1.2 HMG1, domains A and B {Human (Homo sapiens), HMG-I(Y)}
VPTPKRPRGRPKGSKNKGAAKTRKT
>d1eqzb_ 1.23.1.1.3 Histone H2B {Chicken (Gallus gallus), erythrocytes}
VTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
>d1eqzd_ 1.23.1.1.7 Histone H4 {Chicken (Gallus gallus), erythrocytes}
GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
>d1b67a_ 1.23.1.2.1 Histone A {Methanothermus fervidus}
GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMFK
>d1b6wa_ 1.23.1.2.2 Histone B {Methanothermus fervidus}
ELPIAPIGRIIKDAGAERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDIELAVRRFK
>d1bh9a_ 1.23.1.3.3 TAF(II)18 {Human (Homo sapiens)}
LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI
>d1bh9b_ 1.23.1.3.4 TAF(II)28 {Human (Homo sapiens)}
FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP
>d1diog_ 1.24.1.1.1 Diol dehydratase, gamma subunit {Klebsiella oxytoca}
SARVSDYPLANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPETLRLQASIAKDAGRDRLAMNFERAAELTAVPDDRILEIYNALRPYRSTKEELLAIADDLESRYQAKICAAFVREAATLYVERKKLKGDD
>d1mtyg_ 1.24.2.1.1 Methane monooxygenase hydrolase, gamma subunit {Methylococcus capsulatus}
LGIHSNDTRDAWVNKIAHVNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVH
>d2liga_ 1.25.2.1.2 Aspartate receptor, ligand-binding domain {Salmonella typhimurium}
MGGLLFSSLQHCQQGFVISNELRQQQSELTSTWDLMLQTRINLSRSAARMMMDASNQQSSAKTDLLQNAKTTLAQAAAHYANFKNMTPLPAMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNALGEALGNYARVSENLYRQTFD
>d2ccya_ 1.25.3.2.1 Cytochrome c' {Rhodospirillum molischianum}
QSKPEDLLKLRQGLMQTLKSQWVPIAGFAAGKADLPADAAQRAENMAMVAKLAPIGWAKGTEALPNGETKPEAFGSKSAEFLEGWKALATESTKLAAAAKAGPDALKAQAAATGKVCKACHEEFKQD
>d1bbha_ 1.25.3.2.2 Cytochrome c' {Chromatium vinosum}
AGLSPEEQIETRQAGYEFMGWNMGKIKANLEGEYNAAQVEAAANVIAAIANSGMGALYGPGTDKNVGDVKTRVKPEFFQNMEDVGKIAREFVGAANTLAEVAATGEAEAVKTAFGDVGAACKSCHEKYRAK
>d1cgo__ 1.25.3.2.4 Cytochrome c' {Alcaligenes}
XFAKPEDAVKYRQSALTLMASHFGRMTPVVKGQAPYDAAQIKANVEVLKTLTALPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKACHDAYRK
>d1cpq__ 1.25.3.2.6 Cytochrome c' {Rhodobacter capsulatus}
ADTKEVLEAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCKACHDDYREED
>d1a7va_ 1.25.3.2.7 Cytochrome c' {Rhodopseudomonas palustris}
QTDVIAQRKAILKQMGEATKPIAAMLKGEAKFDQAVVQKSLAAIADDSKKLPALFPADSKTGGDTAALPKIWEDKAKFDDLFAKLAAAATAAQGTIKDEASLKANIGGVLGNCKSCHDDFRAKKS
>d1ei7a_ 1.25.5.1.1 Tobacco mosaic virus coat protein {Tobacco mosaic virus, Vulgare strain}
SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT
>d1ivha1 1.25.6.1.4 (242-392) Isovaleryl-CoA dehydrogenase {Human (Homo sapiens)}
KGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD
>e1avo.1a 1.25.8.1.1 Proteasome activator reg(alpha) {Human (Homo sapiens)}
LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI
>d1c02a_ 1.25.9.2.1 Phosphorelay protein ypd1 {Yeast (Saccharomyces cerevisiae)}
STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL
>d1bcfa_ 1.26.1.1.2 Bacterioferritin (cytochrome b1) {Escherichia coli}
MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG