install

C-package of "Long Short-Term Memory" for Protein classification

Requirements:

- A C compiler, this package was tested with the GNU C Compiler gcc.
- GNU make
- For running the SCOP benchmark the Bash shell and Perl.

Installation:

Unpack the LSTM tar archive LSTM.tar.gz by running

tar xzf LSTM.tar.gz

or

gunzip -c LSTM.tar.gz| tar -xf -

cd into the sources in the LSTM directory

cd LSTM/src

Edit the Makefile to choose some optimizations for your architecture but
the default optimization -O3 is good enough for first experiments.

Type 'make' to compile the sources.

make

Quickstart experiment:

Step back to the LSTM directory and then into the quickstartExperiment
directory to run a quick test

cd ../quickstartExperiment

src/lstm -c lstmpars.mem12.ws9.txt

The LSTM sources are located in the directory src.
The resulting binary is called lstm.

Installing the SCOP 1.53 datasets:

Get 'datasetsSCOP1.53.tar.gz' or 'datasetsSCOP1.53.tar.bz2' and copy
the archives in the LSTM/SCOP1.53Experiment directory. Then

for datasetsSCOP1.53.tar.gz

tar xzf datasetsSCOP1.53.tar.gz

or

gunzip -c datasetsSCOP1.53.tar.gz| tar -xf -


or for datasetsSCOP1.53.tar.bz2

tar xjf datasetsSCOP1.53.tar.bz2

or

bunzip2 -c datasetsSCOP1.53.tar.gz| tar -xf -