thresholdcurve.html

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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"><!--NewPage--><HTML><HEAD><!-- Generated by javadoc (build 1.5.0_13) on Tue Jul 15 15:48:38 NZST 2008 --><TITLE>ThresholdCurve</TITLE><META NAME="keywords" CONTENT="weka.classifiers.evaluation.ThresholdCurve class"><LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style"><SCRIPT type="text/javascript">function windowTitle(){    parent.document.title="ThresholdCurve";}</SCRIPT><NOSCRIPT></NOSCRIPT></HEAD><BODY BGCOLOR="white" onload="windowTitle();"><!-- ========= START OF TOP NAVBAR ======= --><A NAME="navbar_top"><!-- --></A><A HREF="#skip-navbar_top" title="Skip navigation links"></A><TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY=""><TR><TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1"><A NAME="navbar_top_firstrow"><!-- --></A><TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">  <TR ALIGN="center" VALIGN="top">  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-all.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="http://www.cs.waikato.ac.nz/ml/weka/" target="_blank"><FONT CLASS="NavBarFont1"><B>Weka's home</B></FONT></A>&nbsp;</TD>  </TR></TABLE></TD><TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM></EM></TD></TR><TR><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">&nbsp;<A HREF="../../../weka/classifiers/evaluation/Prediction.html" title="interface in weka.classifiers.evaluation"><B>PREV CLASS</B></A>&nbsp;&nbsp;<A HREF="../../../weka/classifiers/evaluation/TwoClassStats.html" title="class in weka.classifiers.evaluation"><B>NEXT CLASS</B></A></FONT></TD><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">  <A HREF="../../../index.html?weka/classifiers/evaluation/ThresholdCurve.html" target="_top"><B>FRAMES</B></A>  &nbsp;&nbsp;<A HREF="ThresholdCurve.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;&nbsp;<SCRIPT type="text/javascript">  <!--  if(window==top) {    document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');  }  //--></SCRIPT><NOSCRIPT>  <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A></NOSCRIPT></FONT></TD></TR><TR><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">  SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#field_summary">FIELD</A>&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">DETAIL:&nbsp;<A HREF="#field_detail">FIELD</A>&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD></TR></TABLE><A NAME="skip-navbar_top"></A><!-- ========= END OF TOP NAVBAR ========= --><HR><!-- ======== START OF CLASS DATA ======== --><H2><FONT SIZE="-1">weka.classifiers.evaluation</FONT><BR>Class ThresholdCurve</H2><PRE>java.lang.Object  <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>weka.classifiers.evaluation.ThresholdCurve</B></PRE><DL><DT><B>All Implemented Interfaces:</B> <DD><A HREF="../../../weka/core/RevisionHandler.html" title="interface in weka.core">RevisionHandler</A></DD></DL><HR><DL><DT><PRE>public class <B>ThresholdCurve</B><DT>extends java.lang.Object<DT>implements <A HREF="../../../weka/core/RevisionHandler.html" title="interface in weka.core">RevisionHandler</A></DL></PRE><P>Generates points illustrating prediction tradeoffs that can be obtained by varying the threshold value between classes. For example, the typical  threshold value of 0.5 means the predicted probability of "positive" must be higher than 0.5 for the instance to be predicted as "positive". The  resulting dataset can be used to visualize precision/recall tradeoff, or  for ROC curve analysis (true positive rate vs false positive rate). Weka just varies the threshold on the class probability estimates in each  case. The Mann Whitney statistic is used to calculate the AUC.<P><P><DL><DT><B>Version:</B></DT>  <DD>$Revision: 1.23 $</DD><DT><B>Author:</B></DT>  <DD>Len Trigg (len@reeltwo.com)</DD></DL><HR><P><!-- =========== FIELD SUMMARY =========== --><A NAME="field_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Field Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#FALLOUT_NAME">FALLOUT_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: Fallout</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#FALSE_NEG_NAME">FALSE_NEG_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: False Negatives</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#FALSE_POS_NAME">FALSE_POS_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: False Positives</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#FMEASURE_NAME">FMEASURE_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: FMeasure</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#FP_RATE_NAME">FP_RATE_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: False Positive Rate"</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#PRECISION_NAME">PRECISION_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: Precision</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#RECALL_NAME">RECALL_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: Recall</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#RELATION_NAME">RELATION_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;The name of the relation used in threshold curve datasets</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#THRESHOLD_NAME">THRESHOLD_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: Threshold</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#TP_RATE_NAME">TP_RATE_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: True Positive Rate</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#TRUE_NEG_NAME">TRUE_NEG_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: True Negatives</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#TRUE_POS_NAME">TRUE_POS_NAME</A></B></CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;attribute name: True Positives</TD></TR></TABLE>&nbsp;<!-- ======== CONSTRUCTOR SUMMARY ======== --><A NAME="constructor_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Constructor Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#ThresholdCurve()">ThresholdCurve</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD></TR></TABLE>&nbsp;<!-- ========== METHOD SUMMARY =========== --><A NAME="method_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Method Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;<A HREF="../../../weka/core/Instances.html" title="class in weka.core">Instances</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#getCurve(weka.core.FastVector)">getCurve</A></B>(<A HREF="../../../weka/core/FastVector.html" title="class in weka.core">FastVector</A>&nbsp;predictions)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Calculates the performance stats for the default class and return  results as a set of Instances.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;<A HREF="../../../weka/core/Instances.html" title="class in weka.core">Instances</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#getCurve(weka.core.FastVector, int)">getCurve</A></B>(<A HREF="../../../weka/core/FastVector.html" title="class in weka.core">FastVector</A>&nbsp;predictions,         int&nbsp;classIndex)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Calculates the performance stats for the desired class and return  results as a set of Instances.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;double</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#getNPointPrecision(weka.core.Instances, int)">getNPointPrecision</A></B>(<A HREF="../../../weka/core/Instances.html" title="class in weka.core">Instances</A>&nbsp;tcurve,                   int&nbsp;n)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Calculates the n point precision result, which is the precision averaged over n evenly spaced (w.r.t recall) samples of the curve.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#getRevision()">getRevision</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the revision string.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;double</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#getROCArea(weka.core.Instances)">getROCArea</A></B>(<A HREF="../../../weka/core/Instances.html" title="class in weka.core">Instances</A>&nbsp;tcurve)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Calculates the area under the ROC curve as the Wilcoxon-Mann-Whitney statistic.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;int</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#getThresholdInstance(weka.core.Instances, double)">getThresholdInstance</A></B>(<A HREF="../../../weka/core/Instances.html" title="class in weka.core">Instances</A>&nbsp;tcurve,                     double&nbsp;threshold)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the index of the instance with the closest threshold value to the desired target</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>static&nbsp;void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/evaluation/ThresholdCurve.html#main(java.lang.String[])">main</A></B>(java.lang.String[]&nbsp;args)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Tests the ThresholdCurve generation from the command line.</TD></TR></TABLE>&nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD></TR></TABLE>&nbsp;<P><!-- ============ FIELD DETAIL =========== --><A NAME="field_detail"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2"><B>Field Detail</B></FONT></TH></TR></TABLE><A NAME="RELATION_NAME"><!-- --></A><H3>RELATION_NAME</H3><PRE>public static final java.lang.String <B>RELATION_NAME</B></PRE><DL><DD>The name of the relation used in threshold curve datasets<P><DL><DT><B>See Also:</B><DD><A HREF="../../../constant-values.html#weka.classifiers.evaluation.ThresholdCurve.RELATION_NAME">Constant Field Values</A></DL></DL><HR><A NAME="TRUE_POS_NAME"><!-- --></A><H3>TRUE_POS_NAME</H3><PRE>public static final java.lang.String <B>TRUE_POS_NAME</B></PRE><DL><DD>attribute name: True Positives<P>

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