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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"><!--NewPage--><HTML><HEAD><!-- Generated by javadoc (build 1.5.0_13) on Tue Jul 15 15:48:38 NZST 2008 --><TITLE>PrecomputedKernelMatrixKernel</TITLE><META NAME="keywords" CONTENT="weka.classifiers.functions.supportVector.PrecomputedKernelMatrixKernel class"><LINK REL ="stylesheet" TYPE="text/css" HREF="../../../../stylesheet.css" TITLE="Style"><SCRIPT type="text/javascript">function windowTitle(){ parent.document.title="PrecomputedKernelMatrixKernel";}</SCRIPT><NOSCRIPT></NOSCRIPT></HEAD><BODY BGCOLOR="white" onload="windowTitle();"><!-- ========= START OF TOP NAVBAR ======= --><A NAME="navbar_top"><!-- --></A><A HREF="#skip-navbar_top" title="Skip navigation links"></A><TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY=""><TR><TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1"><A NAME="navbar_top_firstrow"><!-- --></A><TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY=""> <TR ALIGN="center" VALIGN="top"> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD> <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../../index-all.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="http://www.cs.waikato.ac.nz/ml/weka/" target="_blank"><FONT CLASS="NavBarFont1"><B>Weka's home</B></FONT></A> </TD> </TR></TABLE></TD><TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM></EM></TD></TR><TR><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2"> <A HREF="../../../../weka/classifiers/functions/supportVector/PolyKernel.html" title="class in weka.classifiers.functions.supportVector"><B>PREV CLASS</B></A> <A HREF="../../../../weka/classifiers/functions/supportVector/Puk.html" title="class in weka.classifiers.functions.supportVector"><B>NEXT CLASS</B></A></FONT></TD><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2"> <A HREF="../../../../index.html?weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html" target="_top"><B>FRAMES</B></A> <A HREF="PrecomputedKernelMatrixKernel.html" target="_top"><B>NO FRAMES</B></A> <SCRIPT type="text/javascript"> <!-- if(window==top) { document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>'); } //--></SCRIPT><NOSCRIPT> <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A></NOSCRIPT></FONT></TD></TR><TR><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2"> SUMMARY: NESTED | FIELD | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">DETAIL: FIELD | <A HREF="#constructor_detail">CONSTR</A> | <A HREF="#method_detail">METHOD</A></FONT></TD></TR></TABLE><A NAME="skip-navbar_top"></A><!-- ========= END OF TOP NAVBAR ========= --><HR><!-- ======== START OF CLASS DATA ======== --><H2><FONT SIZE="-1">weka.classifiers.functions.supportVector</FONT><BR>Class PrecomputedKernelMatrixKernel</H2><PRE>java.lang.Object <IMG SRC="../../../../resources/inherit.gif" ALT="extended by "><A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html" title="class in weka.classifiers.functions.supportVector">weka.classifiers.functions.supportVector.Kernel</A> <IMG SRC="../../../../resources/inherit.gif" ALT="extended by "><B>weka.classifiers.functions.supportVector.PrecomputedKernelMatrixKernel</B></PRE><DL><DT><B>All Implemented Interfaces:</B> <DD>java.io.Serializable, <A HREF="../../../../weka/core/CapabilitiesHandler.html" title="interface in weka.core">CapabilitiesHandler</A>, <A HREF="../../../../weka/core/OptionHandler.html" title="interface in weka.core">OptionHandler</A>, <A HREF="../../../../weka/core/RevisionHandler.html" title="interface in weka.core">RevisionHandler</A></DD></DL><HR><DL><DT><PRE>public class <B>PrecomputedKernelMatrixKernel</B><DT>extends <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html" title="class in weka.classifiers.functions.supportVector">Kernel</A></DL></PRE><P><!-- globalinfo-start --> This kernel is based on a static kernel matrix that is read from a file. Instances must have a single nominal attribute (excluding the class). This attribute must be the first attribute in the file and its values are used to reference rows/columns in the kernel matrix. The second attribute must be the class attribute. <p/> <!-- globalinfo-end --> <!-- options-start --> Valid options are: <p/> <pre> -D Enables debugging output (if available) to be printed. (default: off)</pre> <pre> -no-checks Turns off all checks - use with caution! (default: checks on)</pre> <pre> -M <file name> The file name of the file that holds the kernel matrix. (default: kernelMatrix.matrix)</pre> <!-- options-end --><P><P><DL><DT><B>Version:</B></DT> <DD>$Revision: 1.1 $</DD><DT><B>Author:</B></DT> <DD>Eibe Frank (eibe@cs.waikato.ac.nz)</DD><DT><B>See Also:</B><DD><A HREF="../../../../serialized-form.html#weka.classifiers.functions.supportVector.PrecomputedKernelMatrixKernel">Serialized Form</A></DL><HR><P><!-- ======== CONSTRUCTOR SUMMARY ======== --><A NAME="constructor_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Constructor Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#PrecomputedKernelMatrixKernel()">PrecomputedKernelMatrixKernel</A></B>()</CODE><BR> </TD></TR></TABLE> <!-- ========== METHOD SUMMARY =========== --><A NAME="method_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Method Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#clean()">clean</A></B>()</CODE><BR> Frees the memory used by the kernel.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> double</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#eval(int, int, weka.core.Instance)">eval</A></B>(int id1, int id2, <A HREF="../../../../weka/core/Instance.html" title="class in weka.core">Instance</A> inst1)</CODE><BR> Computes the result of the kernel function for two instances.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> <A HREF="../../../../weka/core/Capabilities.html" title="class in weka.core">Capabilities</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#getCapabilities()">getCapabilities</A></B>()</CODE><BR> Returns the Capabilities of this kernel.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.io.File</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#getKernelMatrixFile()">getKernelMatrixFile</A></B>()</CODE><BR> Gets the file containing the kernel matrix.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String[]</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#getOptions()">getOptions</A></B>()</CODE><BR> Gets the current settings of the Kernel.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#getRevision()">getRevision</A></B>()</CODE><BR> Returns the revision string.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#globalInfo()">globalInfo</A></B>()</CODE><BR> Returns a string describing the kernel</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#kernelMatrixFileTipText()">kernelMatrixFileTipText</A></B>()</CODE><BR> Returns the tip text for this property</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.util.Enumeration</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#listOptions()">listOptions</A></B>()</CODE><BR> Returns an enumeration describing the available options.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> int</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#numCacheHits()">numCacheHits</A></B>()</CODE><BR> Returns the number of dot product cache hits.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> int</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#numEvals()">numEvals</A></B>()</CODE><BR> Returns the number of kernel evaluation performed.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#setKernelMatrixFile(java.io.File)">setKernelMatrixFile</A></B>(java.io.File f)</CODE><BR> Sets the file holding the kernel matrix</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#setOptions(java.lang.String[])">setOptions</A></B>(java.lang.String[] options)</CODE><BR> Parses a given list of options.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../../weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.html#toString()">toString</A></B>()</CODE><BR> returns a string representation for the Kernel</TD></TR></TABLE> <A NAME="methods_inherited_from_class_weka.classifiers.functions.supportVector.Kernel"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TH ALIGN="left"><B>Methods inherited from class weka.classifiers.functions.supportVector.<A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html" title="class in weka.classifiers.functions.supportVector">Kernel</A></B></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE><A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#buildKernel(weka.core.Instances)">buildKernel</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#checksTurnedOffTipText()">checksTurnedOffTipText</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#debugTipText()">debugTipText</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#forName(java.lang.String, java.lang.String[])">forName</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#getChecksTurnedOff()">getChecksTurnedOff</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#getDebug()">getDebug</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#makeCopies(weka.classifiers.functions.supportVector.Kernel, int)">makeCopies</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#makeCopy(weka.classifiers.functions.supportVector.Kernel)">makeCopy</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#setChecksTurnedOff(boolean)">setChecksTurnedOff</A>, <A HREF="../../../../weka/classifiers/functions/supportVector/Kernel.html#setDebug(boolean)">setDebug</A></CODE></TD></TR></TABLE> <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</CODE></TD></TR></TABLE> <P><!-- ========= CONSTRUCTOR DETAIL ======== --><A NAME="constructor_detail"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2"><B>Constructor Detail</B></FONT></TH></TR></TABLE><A NAME="PrecomputedKernelMatrixKernel()"><!-- --></A><H3>PrecomputedKernelMatrixKernel</H3><PRE>public <B>PrecomputedKernelMatrixKernel</B>()</PRE><DL></DL><!-- ============ METHOD DETAIL ========== --><A NAME="method_detail"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2"><B>Method Detail</B></FONT></TH>
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